PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009992m
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 410aa    MW: 46485.4 Da    PI: 6.5759
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009992mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.66.8e-11203244854
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       Er RR + +++f  L++l+P++     +K++ a+i+ +A++YIk+L
  Thhalv10009992m 203 TERERRVHFKDRFGDLKSLIPNP-----TKNDRASIVGEAIDYIKEL 244
                      7**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.64E-9193249No hitNo description
SuperFamilySSF474597.46E-13194259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.221195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-10195257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-7201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-8202244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEGRNMFEEI GCFDPNAPAR FNFHSAEPPP SSRRRGSEKL AAAAAASVHQ QLQINATPPN  60
NCDHQFQSIM HQTLQDPSSY APHSNNWDSG YQDFVNLGPN HTTPDLLSLL QLPRSSLPPF  120
TNPNFQDLIM TSSSVSTAFD PLFHLNFPLQ QPPNGALLGV LEDDQMESNG VDDHLIYAEE  180
NNNTEIGLNR KGRGSRKRKI FPTERERRVH FKDRFGDLKS LIPNPTKNDR ASIVGEAIDY  240
IKELLRTIED LKMLMEQKRI IKNRNKRVRI EEEGDDFVDG KYKAQSEVVE QCLINKNNNS  300
LRCSWLKRKS KFTEVDVRII DDEVTIKIVQ KKKINCLLFV SKVIDQLQLD IHHVAGAQIG  360
EHHSFLFNTK ICEGSSVYAS AIADRVMEVL EKQYMEALST NNGYNYSSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009992m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417951.20.0transcription factor bHLH89
SwissprotQ9LND00.0BH089_ARATH; Transcription factor bHLH89
TrEMBLV4KY840.0V4KY84_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006417951.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.20.0bHLH family protein
Publications ? help Back to Top
  1. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]