PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10009947m | ||||||||
Common Name | EUTSA_v10009947mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 21212 Da PI: 9.7669 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.1e-19 | 11 | 60 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa a++ a++ l+g Thhalv10009947m 11 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARFLRG 60 6********.**********883....5***********************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.0E-34 | 11 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-31 | 11 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.21E-27 | 11 | 68 | No hit | No description |
SuperFamily | SSF54171 | 5.04E-22 | 11 | 69 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-13 | 11 | 60 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.405 | 11 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-11 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-11 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG 60 IKAKTNFPSP LSLDLNHIPS APSSATASAA PDNQNHHLQH QHQHIWFPAP PPPIPDQHQH 120 HRIFLRTGVL NDKTSDFPSA EAPLYYTALP AAAATSSPRV VEFPMMSSSP SSATVRRGLA 180 IDLNEPPPLW L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-21 | 7 | 68 | 1 | 63 | ATERF1 |
3gcc_A | 9e-21 | 7 | 68 | 1 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10009947m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB055883 | 1e-84 | AB055883.1 Arabidopsis thaliana AtERF12 gene for ERF domain protein12, complete cds. | |||
GenBank | AC010155 | 1e-84 | AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence. | |||
GenBank | AY099798 | 1e-84 | AY099798.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds. | |||
GenBank | BT002604 | 1e-84 | BT002604.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-84 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415666.1 | 1e-139 | ethylene-responsive transcription factor 12 | ||||
Swissprot | Q94ID6 | 6e-95 | ERF81_ARATH; Ethylene-responsive transcription factor 12 | ||||
TrEMBL | V4KRX0 | 1e-137 | V4KRX0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415666.1 | 1e-138 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 5e-75 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10009947m |
Entrez Gene | 18992229 |