PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009672m
Common NameEUTSA_v10009672mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 289aa    MW: 32430 Da    PI: 6.9576
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009672mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.9e-33140197259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++pr+YY+Ct+++C+vkk+vers +dp++v++tYeg+Hnh+
  Thhalv10009672m 140 EDGYRWRKYGQKAVKNSPYPRGYYKCTTQKCNVKKRVERSFQDPSFVITTYEGKHNHP 197
                      8********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-35124199IPR003657WRKY domain
SuperFamilySSF1182902.62E-29131199IPR003657WRKY domain
PROSITE profilePS5081132.937134199IPR003657WRKY domain
SMARTSM007742.6E-38139198IPR003657WRKY domain
PfamPF031061.1E-25140197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDDHVDLANT SLEKVSFTSL TDCLESSLVM DYSSLENAFK FSPYSSPFQP TSPSNMGQIV  60
NYPYLNINPN SPLVSSSSNE ADPKEKLDDK SGQMENNEGD QHGVGECSKQ LTKKGKSKGE  120
KKEREAKVAF MTKSEVDHLE DGYRWRKYGQ KAVKNSPYPR GYYKCTTQKC NVKKRVERSF  180
QDPSFVITTY EGKHNHPIPS TLRGHVAAEH LLGHGGSGLL HSFPSHHQEF LMMNHHPPVN  240
YQSSVGSISY EQYSHCNSSY NSSTHDQQVV DYGLLQDIVP SMFLKHEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-30129200778Probable WRKY transcription factor 4
2lex_A9e-30129200778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00168DAPTransfer from AT1G29860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009672m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415540.10.0probable WRKY transcription factor 71
SwissprotQ93WV41e-135WRK71_ARATH; WRKY transcription factor 71
TrEMBLV4L2B00.0V4L2B0_EUTSA; Uncharacterized protein
STRINGXP_006415540.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139111825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-117WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  2. Yu Y, et al.
    WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana.
    Plant J., 2016. 85(1): p. 96-106
    [PMID:26643131]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Yu Y, et al.
    WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(2): p. 414-422
    [PMID:29272465]