PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10009647m | ||||||||
Common Name | EUTSA_v10009647mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 298aa MW: 33055.8 Da PI: 9.3804 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.2e-18 | 55 | 105 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +gr++AeIrdp++ + r +lg+f+taeeAa a++ a++ ++g Thhalv10009647m 55 TRYRGVRRRP-WGRYAAEIRDPTS---KERRWLGTFDTAEEAACAYDVAARTFRG 105 68********.**********854...4999********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.82E-30 | 55 | 112 | No hit | No description |
Pfam | PF00847 | 1.3E-10 | 55 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-35 | 56 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.011 | 56 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 56 | 114 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 56 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 57 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 79 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0010084 | Biological Process | specification of organ axis polarity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MEEALRKFNS PIPDYEPDPI HFKRNFTKAK ASPVNRRSSS KEITVTVPGD GCTKTRYRGV 60 RRRPWGRYAA EIRDPTSKER RWLGTFDTAE EAACAYDVAA RTFRGSKART NFTYPTANAV 120 PVPEPRFSFF SKKYQPSVRC PIPLDHSTHE FFGTPTLQRS NKEPLFLRDA SCSSSKTSPF 180 NSFNGSSSSY SQPKTAHVSS SPEENYSETG LLQEVVQEFL KKNPNRPPPP PPTPPQSPPS 240 YSGDFSALSV VPYNSGYFDG VSAAADGGFT YGSGEWGYQD MLMYGTQLGC TCRKSWG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 49 | 112 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryo patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10009647m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:11752375}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417169.1 | 0.0 | ethylene-responsive transcription factor ESR1 | ||||
Swissprot | Q9SAD4 | 1e-105 | ESR1_ARATH; Ethylene-responsive transcription factor ESR1 | ||||
TrEMBL | V4KZS8 | 0.0 | V4KZS8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417169.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14072 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12980.1 | 1e-82 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10009647m |
Entrez Gene | 18993572 |
Publications ? help Back to Top | |||
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