PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10009328m | ||||||||
Common Name | EUTSA_v10009328mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 27638.7 Da PI: 4.838 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 3e-18 | 38 | 87 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a+++a+++++g Thhalv10009328m 38 KYLGVRRRP-WGRYAAEIRNPTT---KERYWLGTFDTAEEAALAYDRAARSIRG 87 799******.**********965...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.05E-21 | 38 | 96 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-12 | 38 | 87 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.153 | 38 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-32 | 38 | 101 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.14E-30 | 38 | 94 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.6E-28 | 38 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-9 | 39 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-9 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MEFNGSSNAG SSSRSKKSHR QKQQQLQPQP QQHNEEIKYL GVRRRPWGRY AAEIRNPTTK 60 ERYWLGTFDT AEEAALAYDR AARSIRGLTA RTNFVYSDMP RGSSVTSFIS PDESQRFISE 120 LFNLPNQQEA LNNNNNNNLY SSASNQNQNH NSSEFSYNGW PQETECGYNS INNDEHCDHE 180 LPPLPPSTCF GAELRIPETD SYWNAAHASI DTFSFELDGF VDQNSLGQSG TEGFDSSSST 240 FFFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 35 | 94 | 11 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00163 | DAP | Transfer from AT1G28160 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10009328m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ446295 | 0.0 | DQ446295.1 Arabidopsis thaliana clone pENTR221-At1g28160 ethylene-responsive element-binding family protein (At1g28160) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415689.1 | 0.0 | ethylene-responsive transcription factor ERF087 | ||||
Swissprot | Q9FZ90 | 1e-140 | ERF87_ARATH; Ethylene-responsive transcription factor ERF087 | ||||
TrEMBL | V4KVK2 | 0.0 | V4KVK2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415689.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12933 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28160.1 | 1e-111 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10009328m |
Entrez Gene | 18992250 |
Publications ? help Back to Top | |||
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