PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10009009m
Common NameEUTSA_v10009009mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TALE
Protein Properties Length: 152aa    MW: 17443.7 Da    PI: 8.0517
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10009009mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-09941282155
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      k +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  Thhalv10009009m  94 KWPYPTEGDKIALADATGLDQKQINNWFINQRKRH 128
                      569*****************************985 PP
2ELK32.22.3e-114869122
              ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                     +LK++L+rK+++++gsLk EFs
  Thhalv10009009m 48 DLKDRLMRKFGSRIGSLKLEFS 69
                     69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011886.2E-54869IPR005539ELK domain
PfamPF037896.7E-84869IPR005539ELK domain
PROSITE profilePS512139.7954868IPR005539ELK domain
PROSITE profilePS5007112.34168131IPR001356Homeobox domain
SuperFamilySSF466895.13E-2069145IPR009057Homeodomain-like
SMARTSM003891.5E-1270135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.4E-2873132IPR009057Homeodomain-like
CDDcd000862.49E-1177132No hitNo description
PfamPF059208.3E-1888127IPR008422Homeobox KN domain
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MVGSSECIFC QTVKTIMKSE DGAISSDEEL SGGDEISQDG KQRCEDRDLK DRLMRKFGSR  60
IGSLKLEFSK KKKKGKLPRE ARQALLDWWN VHYKWPYPTE GDKIALADAT GLDQKQINNW  120
FINQRKRHWK PSENMPFAMM DDSSGSFFTE E*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10009009m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0723611e-119AB072361.1 Arabidopsis thaliana KNAT6S mRNA for homeodomain transcription factor KNAT6, complete cds.
GenBankAB0723621e-119AB072362.1 Arabidopsis thaliana KNAT6L mRNA for homeodomain transcription factor KNAT6, complete cds.
GenBankBT0029301e-119BT002930.1 Arabidopsis thaliana clone RAFL14-89-I21 (R20256) putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds.
GenBankBT0043701e-119BT004370.1 Arabidopsis thaliana clone U20256 putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008598.11e-93homeobox protein knotted-1-like 6
SwissprotQ84JS61e-83KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLV4L3V01e-108V4L3V0_EUTSA; Uncharacterized protein
STRINGXP_006416090.11e-109(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.28e-79KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]