PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10008989m | ||||||||
Common Name | EUTSA_v10008989mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 157aa MW: 16157 Da PI: 8.201 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 46 | 8.6e-15 | 37 | 61 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP GA+sV+Ca+C++V Thhalv10008989m 37 CSGCRNLLMYPVGATSVCCAVCNAV 61 ************************9 PP | |||||||
2 | zf-LSD1 | 46.6 | 5.4e-15 | 76 | 100 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Thhalv10008989m 76 CGGCHTLLMYIRGATSVQCSCCHTV 100 ************************9 PP | |||||||
3 | zf-LSD1 | 38.6 | 1.8e-12 | 114 | 138 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C lL+Y +GA+sV+Ca+C++V Thhalv10008989m 114 CGNCWMLLMYQYGARSVKCAVCNFV 138 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.8E-14 | 34 | 64 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-11 | 37 | 61 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 8.79E-6 | 37 | 135 | IPR011031 | Multihaem cytochrome |
Gene3D | G3DSA:3.90.10.10 | 7.5E-4 | 51 | 135 | No hit | No description |
TIGRFAMs | TIGR01053 | 9.8E-15 | 73 | 102 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.5E-12 | 76 | 100 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.1E-10 | 111 | 141 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.6E-12 | 114 | 138 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 157 aa Download sequence Send to blast |
MPVPLAPYPS PPPPALAPSF TPPPANGSTG GQSQLVCSGC RNLLMYPVGA TSVCCAVCNA 60 VTAVPPPGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLALEANQVA QVNCGNCWML 120 LMYQYGARSV KCAVCNFVTS VGVSSLINTL MKKKSV* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10008989m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY057675 | 1e-150 | AY057675.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds. | |||
GenBank | AY116951 | 1e-150 | AY116951.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds. | |||
GenBank | AY349618 | 1e-150 | AY349618.1 Arabidopsis thaliana LSD1-like (LOL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415176.1 | 7e-99 | protein LOL1 isoform X1 | ||||
Refseq | XP_006415177.1 | 7e-99 | protein LOL1 isoform X1 | ||||
Swissprot | Q93ZB1 | 3e-81 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | V4MPJ9 | 1e-107 | V4MPJ9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415178.1 | 1e-107 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7293 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32540.3 | 4e-66 | lsd one like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10008989m |
Entrez Gene | 18991790 |
Publications ? help Back to Top | |||
---|---|---|---|
|