PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008961m
Common NameEUTSA_v10008961mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18860.2 Da    PI: 10.2721
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008961mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.32.6e-151150342
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i ++s r vtf kR+ g+lKK +EL +LC+ +++ ii+s 
  Thhalv10008961m 11 IADNSTRRVTFRKRKDGLLKKLKELTILCGLRACAIIYSD 50
                     788999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.843150IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-21185IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-17160IPR002100Transcription factor, MADS-box
CDDcd002665.86E-19285No hitNo description
PRINTSPR004041.0E-7323IPR002100Transcription factor, MADS-box
PfamPF003198.6E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGRRKVTHQL IADNSTRRVT FRKRKDGLLK KLKELTILCG LRACAIIYSD YKEGPELWPN  60
HKEVRVLLNR LSALPVEKQT KYMMDQKDLM NRMIQDAEKK LEKEQMHSRA MELGMIASFK  120
DMRDADYSEE LVKAADVVEK RINVIRERIK AVESGAALVK KE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLIADNSTRRVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008961m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416183.11e-116agamous-like MADS-box protein AGL80
TrEMBLV4MRZ11e-114V4MRZ1_EUTSA; Uncharacterized protein
STRINGXP_006416183.11e-115(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.26e-81AGAMOUS-like 87