PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008928m
Common NameEUTSA_v10008928mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 170aa    MW: 18740.2 Da    PI: 10.4764
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008928mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-1976134155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+W+AeIr+ + +g   k    r +lg+f taeeAa a+++a+ +l g
  Thhalv10008928m  76 KKFRGVRQRP-WGKWAAEIRCGRARGgdrKGrpVRLWLGTFETAEEAALAYDNAAIQLIG 134
                      59********.**********777555963379**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.6E-351169IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000189.15E-2576141No hitNo description
SuperFamilySSF541713.01E-1877142IPR016177DNA-binding domain
PfamPF008473.1E-1377134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2677142IPR001471AP2/ERF domain
PROSITE profilePS5103221.37777142IPR001471AP2/ERF domain
SMARTSM003803.7E-2877148IPR001471AP2/ERF domain
PRINTSPR003672.2E-117889IPR001471AP2/ERF domain
PRINTSPR003672.2E-11108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MKRIVRISFT DEEATDSSSS EDEQTKSESP SRRRGKKFVK EIVIDSPDSP NNLEVSKTRF  60
KIRIPAKLLA ATGKKKKFRG VRQRPWGKWA AEIRCGRARG GDRKGRPVRL WLGTFETAEE  120
AALAYDNAAI QLIGPDAPTN FGRPKVELPA VKLDSDAGAS VASREEEEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1774141262ATERF1
3gcc_A3e-1774141262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008928m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416134.11e-118ethylene-responsive transcription factor ERF069
SwissprotQ8W4I51e-66ERF69_ARATH; Ethylene-responsive transcription factor ERF069
TrEMBLV4KWU51e-117V4KWU5_EUTSA; Uncharacterized protein
STRINGXP_006416134.11e-118(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22985.11e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]