PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10008825m

Common Name

EUTSA_v10008825mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bZIP

Protein Properties

Length: 198aa MW: 22822 Da PI: 5.3789

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10008825m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.8	2.3e-13	87	137	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +++rr+++NRe+ArrsR RK+ ++eL v L + N+ L+++l++ ++ Thhalv10008825m 87 RKQRRMISNRESARRSRMRKQRHLDELWSQVMRLRTDNHCLIDKLNRVSES 137 79*******************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-14	83	147	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.208	85	137	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.7E-11	85	137	No hit	No description
SuperFamily	SSF57959	5.81E-12	87	136	No hit	No description
Pfam	PF00170	2.4E-11	87	137	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.62E-17	88	138	No hit	No description
PROSITE pattern	PS00036	0	90	105	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MNTIPAELTG LFQYVSSEKY NNQTPIMESE YFNMPSSPTS SSSFYYINGL INNNNNYSSS 60 SNGQDLMTSN NSTSDEDHQQ SMVIDERKQR RMISNRESAR RSRMRKQRHL DELWSQVMRL 120 RTDNHCLIDK LNRVSESHEL ALKENAKLKE ETSDLRQLIS EIKSNNEDDG SFLRELEDSI 180 STSRSDSNQR GRDFGLC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	106	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10008825m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC027134	0.0	AC027134.4 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete sequence.
GenBank	AF332430	0.0	AF332430.1 Arabidopsis thaliana clone C00105 (e) putative bZIP transcription factor (At1g13600) mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F21F23	0.0	AC027656.4 Sequence of BAC F21F23 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006417112.1	1e-143	basic leucine zipper 43
Swissprot	Q9FMC2	2e-35	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	V4KCJ7	1e-141	V4KCJ7_EUTSA; Uncharacterized protein
STRING	XP_006417112.1	1e-142	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2892	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13600.1	1e-115	basic leucine-zipper 58

Link Out ? help Back to Top
Phytozome	Thhalv10008825m
Entrez Gene	18993517

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]