PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10008787m | ||||||||
Common Name | EUTSA_v10008787mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NF-YC | ||||||||
Protein Properties | Length: 207aa MW: 22907.7 Da PI: 9.5278 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 46.5 | 7.8e-15 | 99 | 186 | 12 | 99 |
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++d k ++P+ ri++i+++d+ +i +a l+ ka elfi ++ ++ + + k++ ++ ++++v++ + ++fl d vp++ Thhalv10008787m 99 GVEDAKTIRFPMNRIRRIMRSDNTAPQIMQDAVFLVNKATELFIERFSEEAYESSVQDKKKFIHYKHLSSVVSNEERYEFLADCVPEK 186 56899999*****************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.65E-19 | 98 | 185 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-21 | 107 | 170 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.6E-24 | 108 | 185 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MVSSKKPNKE KKPKSDGVNK AGGRVSGSKA EKKTPNKAKS GAIVKKDPEV YEISESSSSG 60 SVEEARRDES KKSNGVVKNG CNGKGDKRRK NGEEDDGGGV EDAKTIRFPM NRIRRIMRSD 120 NTAPQIMQDA VFLVNKATEL FIERFSEEAY ESSVQDKKKF IHYKHLSSVV SNEERYEFLA 180 DCVPEKLKAE VALEEWERGM TVTDAG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10008787m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229011 | 9e-98 | AK229011.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-31-C07. | |||
GenBank | AK229266 | 9e-98 | AK229266.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-54-O22. | |||
GenBank | AY086815 | 9e-98 | AY086815.1 Arabidopsis thaliana clone 28026 mRNA, complete sequence. | |||
GenBank | BT025266 | 9e-98 | BT025266.1 Arabidopsis thaliana At1g07980 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417743.1 | 1e-148 | DNA polymerase epsilon subunit C | ||||
TrEMBL | V4MVC4 | 1e-147 | V4MVC4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417743.1 | 1e-148 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11190 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 5e-64 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10008787m |
Entrez Gene | 18994076 |