PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10008781m | ||||||||
Common Name | EUTSA_v10008781mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 23165.2 Da PI: 5.2797 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.8 | 1.6e-42 | 35 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+l Thhalv10008781m 35 PCAACKILRRRCGEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARIRDPVYGCAGAIYHLQRQVSELQAQL 128 7********************************************************************************************* PP DUF260 95 allkee 100 a+++ e Thhalv10008781m 129 AKAQVE 134 *99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.011 | 34 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-42 | 35 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MLDMENKGDA SAAIISASSN SSHPPPLSPR VVLSPCAACK ILRRRCGEKC VLAPYFPPTE 60 PAKFTIAHRV FGASNIIKFL QELPESQRTD AVNSMVYEAG ARIRDPVYGC AGAIYHLQRQ 120 VSELQAQLAK AQVEIVNMQS QRSNLLELIH NYMDQPKQEQ HYMSFGSSFE NCDEFIGSPD 180 EESNDFGFLK DNSNTNLSML WCDPFWI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-41 | 34 | 137 | 10 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-41 | 34 | 137 | 10 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10008781m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473841 | 1e-148 | AB473841.1 Arabidopsis thaliana ASL8 mRNA for ASYMMETRIC LEAVES2-like 8 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417754.1 | 1e-155 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 1e-100 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | V4L1E7 | 1e-154 | V4L1E7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417754.1 | 1e-155 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-98 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10008781m |
Entrez Gene | 18994083 |