PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008699m
Common NameEUTSA_v10008699mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 227aa    MW: 25467.9 Da    PI: 6.5202
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008699mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09115162455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++iN+++  L++l+P +     k +  a +Le  ++Y++sLq
  Thhalv10008699m 115 SHSLAERVRREKINEKLKCLQDLVPGC----YKTMGMAVMLEVIIDYVRSLQ 162
                      8*************************9....355999*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.31E-12109166No hitNo description
SuperFamilySSF474591.57E-16109178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16111172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472111161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6115162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-9117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MARFEPYNYS IGLHPLLAQI NKNPELTNLD SPVSTPSSFM LFSNGALVDA HHNDSHFSPN  60
LLAPGGLGRK GKKEESGSKR RRKRSEEEEF MNEDDIQKPR DVVHVRAKRG QATDSHSLAE  120
RVRREKINEK LKCLQDLVPG CYKTMGMAVM LEVIIDYVRS LQNQIEFLSM KLSVASAYYD  180
LNSLDIEPTD MYQGGNMYGA EEMEKILRES VGTQPPNFSS TLPFGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008699m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6528590.0DQ652859.1 Arabidopsis thaliana clone 0000017109_0000011994 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415858.11e-169transcription factor bHLH75
SwissprotA4D9981e-125BH075_ARATH; Transcription factor bHLH75
TrEMBLV4MR531e-167V4MR53_EUTSA; Uncharacterized protein
STRINGXP_006415858.11e-168(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140812024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-118bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]