PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10008672m | ||||||||
Common Name | EUTSA_v10008672mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 26694.8 Da PI: 4.8759 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.8 | 1.6e-17 | 68 | 121 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+ ql+ Lee Fe+++ + e++ LA+klgL+ +qV vWFqNrRa+ k Thhalv10008672m 68 KKRKLTPVQLRLLEESFEEEKRLEPERKLWLAEKLGLQPSQVAVWFQNRRARFK 121 56699***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 113.7 | 1.1e-36 | 68 | 158 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+l+ q++lLEesFeee++LeperK la++Lglqp qvavWFqnrRAR+ktkqlE+d+++Lk++y +lk++++ L ++e+L+++++ Thhalv10008672m 68 KKRKLTPVQLRLLEESFEEEKRLEPERKLWLAEKLGLQPSQVAVWFQNRRARFKTKQLEQDCDSLKASYAKLKTDRDILFLQNETLKNKVA 158 9**************************************************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.17E-18 | 49 | 125 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.487 | 63 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-16 | 66 | 127 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.32E-15 | 68 | 124 | No hit | No description |
Pfam | PF00046 | 5.8E-15 | 68 | 121 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-19 | 70 | 130 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.3E-5 | 94 | 103 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 98 | 121 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.3E-5 | 103 | 119 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-12 | 123 | 164 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MENSNTDSEF LFWFQNQKQS HSHNFASSCF PPSSHSAFYG SSSMSNTETN TVDDEDVFES 60 YKMREITKKR KLTPVQLRLL EESFEEEKRL EPERKLWLAE KLGLQPSQVA VWFQNRRARF 120 KTKQLEQDCD SLKASYAKLK TDRDILFLQN ETLKNKVALL KEKLKMKDNL ETQPMEAEKL 180 GEEGSSVKSD DNTQCSEEEE ALGNQYSFPE LAALGFYYDP TLAASNLRLW * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 115 | 123 | RRARFKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10008672m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC000348 | 1e-120 | AC000348.2 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 1e-120 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024008463.1 | 1e-158 | homeobox-leucine zipper protein ATHB-54 isoform X1 | ||||
Swissprot | P0CJ65 | 1e-137 | ATB54_ARATH; Homeobox-leucine zipper protein ATHB-54 | ||||
TrEMBL | V4K9K4 | 1e-168 | V4K9K4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415992.1 | 1e-169 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15908 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G27045.1 | 1e-119 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10008672m |
Entrez Gene | 18992522 |