PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008615m
Common NameEUTSA_v10008615mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 245aa    MW: 27526.5 Da    PI: 4.8311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008615mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-172069255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y GVr+++ +gr++AeIr  +     +  r++lg+f+taeeAa a++ a++++ g
  Thhalv10008615m 20 KYLGVRRRP-WGRYAAEIRNpF-----TkERHWLGTFDTAEEAAFAYDVAARSISG 69
                     799******.**********66.....34**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-272076IPR001471AP2/ERF domain
PfamPF008474.1E-102068IPR001471AP2/ERF domain
PROSITE profilePS5103220.5342077IPR001471AP2/ERF domain
CDDcd000181.16E-282076No hitNo description
SMARTSM003803.8E-302083IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-202077IPR016177DNA-binding domain
PRINTSPR003671.6E-82132IPR001471AP2/ERF domain
PRINTSPR003671.6E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLKSRNKSKS KQEKKSQEVK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAAFAY  60
DVAARSISGS LAKTNFFYTE NISLQRQPQQ LLQSSSDKDF VNPFVSMGPD MSLGSSSFRF  120
LQDQPPENNH YVAGPIPSFW QEQQFSANLT NAFLDCYDDD HVGKKKEVSL PSFPNDISSS  180
LFGLQDNIGE YGDADHTKAG SVLSVDPYCF EYDFLLSNMP TSLLDDVNGD FPQVTESSSS  240
LSYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1716831078Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008615m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934541e-94AB493454.1 Arabidopsis thaliana At1g12890 mRNA for hypothetical protein, partial cds, clone: RAAt1g12890.
GenBankCP0026841e-94CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF13K231e-94AC012187.3 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417179.10.0ethylene-responsive transcription factor ERF088
SwissprotQ3E7031e-102ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLV4KZT40.0V4KZT4_EUTSA; Uncharacterized protein
STRINGXP_006417179.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.17e-78ERF family protein