PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10008487m | ||||||||
Common Name | EUTSA_v10008487mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 266aa MW: 30570 Da PI: 5.1075 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.6 | 1.9e-17 | 78 | 131 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eql++Le+ Fe +++ +++ eLA+ lgL+ rq+ +WFqNrRa+ k Thhalv10008487m 78 KKRRLNMEQLKTLEKNFEIGNKLESDRKLELARALGLQPRQIAIWFQNRRARSK 131 456899**********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 122.1 | 2.8e-39 | 77 | 169 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eq+k+LE++Fe +kLe++rK elar+Lglqprq+a+WFqnrRAR ktkqlE+dy+aLkr++++lk+ene L++++++L++++++ Thhalv10008487m 77 EKKRRLNMEQLKTLEKNFEIGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLERDYDALKRQFESLKDENEILQTQNQKLQAQVMA 169 69**************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.27E-19 | 60 | 135 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.4E-18 | 61 | 134 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 73 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-17 | 76 | 137 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.0E-15 | 78 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.19E-15 | 78 | 134 | No hit | No description |
PRINTS | PR00031 | 4.8E-6 | 104 | 113 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.8E-6 | 113 | 129 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-14 | 133 | 171 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MTCNNGLAFF PANFSLQNHH QEEEEDHPQS LLPSCTLPQD FHGFLGKRSP MPNVEGFCNL 60 EMNGEEEFSD DGSKMGEKKR RLNMEQLKTL EKNFEIGNKL ESDRKLELAR ALGLQPRQIA 120 IWFQNRRARS KTKQLERDYD ALKRQFESLK DENEILQTQN QKLQAQVMAL KCREPIESIN 180 LNKETEGSCS NRSENISGDI RLPEINSQFA GGHQPSSPTT TTVQFFQNSS SEQRMVKEEN 240 SISNMFCGMD DQSGFWPWLD QQHYN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RRARSKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10008487m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353427 | 0.0 | AK353427.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-L09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415983.1 | 0.0 | homeobox-leucine zipper protein ATHB-23 | ||||
Swissprot | Q8LFD3 | 1e-164 | ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23 | ||||
TrEMBL | V4MRF6 | 0.0 | V4MRF6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415983.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2633 | 27 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26960.1 | 1e-167 | homeobox protein 23 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10008487m |
Entrez Gene | 18992513 |
Publications ? help Back to Top | |||
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