PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008403m
Common NameEUTSA_v10008403mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 285aa    MW: 32631.3 Da    PI: 4.9468
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008403mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.3e-122062148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll ++++  G g+W++ a+  g     k+c++rw++yl
  Thhalv10008403m 20 KGPWTLEEDTLLTNYIANNGEGRWNLLAKSSG-----KSCRLRWLNYL 62
                     79******************************.....*********97 PP

2Myb_DNA-binding49.31.2e-1568111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia +++ gRt++++k++w++
  Thhalv10008403m  68 RGNLTPQEQLLILELHSKWGNR-WSKIALYLP-GRTDNEIKNYWRT 111
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.1321562IPR017930Myb domain
SuperFamilySSF466893.26E-2618109IPR009057Homeodomain-like
SMARTSM007171.2E-91964IPR001005SANT/Myb domain
PfamPF002494.1E-102062IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-182169IPR009057Homeodomain-like
CDDcd001675.74E-82262No hitNo description
PROSITE profilePS5129425.08563117IPR017930Myb domain
SMARTSM007172.2E-1467115IPR001005SANT/Myb domain
PfamPF002499.2E-1568111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2270116IPR009057Homeodomain-like
CDDcd001676.12E-1172111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSNIMKRSYD GNEDGAEQRK GPWTLEEDTL LTNYIANNGE GRWNLLAKSS GKSCRLRWLN  60
YLKPDIKRGN LTPQEQLLIL ELHSKWGNRW SKIALYLPGR TDNEIKNYWR TRVQKQARQL  120
NIDSSSHKFL EVVRSFWVPR LIHKTKDNSD TNTKAPPPDS LGPVIRDTDF SQEPGFNMDC  180
SSTTMSQDLK KISEFMDLSD LETSSSSMYL DGSRGSSSQS VSENYSSCFP CIEGDYTVAT  240
MGNSDILPLH DCHIADSAYE EDVTQDPMWN MDDIWQFKEY AYFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24201177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008403m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008420.10.0transcription factor MYB62
SwissprotQ9C9G71e-97MYB62_ARATH; Transcription factor MYB62
TrEMBLV4L3920.0V4L392_EUTSA; Uncharacterized protein
STRINGXP_006415860.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.21e-151myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]