PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10008326m | ||||||||
Common Name | EUTSA_v10008326mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 299aa MW: 32734.3 Da PI: 4.9272 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.2e-20 | 108 | 157 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Thhalv10008326m 108 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 157 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.93E-34 | 107 | 167 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-23 | 108 | 166 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.169 | 108 | 165 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-37 | 108 | 171 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-32 | 108 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 109 | 120 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-14 | 109 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 131 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MTTAMDFYSS KTLQQCDPFG GELMEALLPF IKSPSCDSTA SAFASAFSLP PPYSSYSGSY 60 PDVCMTQPIS YGSDLQQLGS QINSFSNLLS PKPVPMKQTG AATKPTKLYR GVRQRHWGKW 120 VAEIRLPRNR TRLWLGTFDT AEEAALAYDK AAYKLRGDFA RLNFPNLRHN GSNIGGEYQP 180 LQSSVDAKLE AICQDLAETQ KQGKSAKKAS SRKRSSTAAA KQPEVNSCPE LAEEVKSEDY 240 SSSGSSPSTE SYGSGDSSPL SDLTFADTEE EQPPWNENFA LEKYPSYEID WESILSTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-21 | 107 | 165 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10008326m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352945 | 1e-79 | AK352945.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-I08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006416222.1 | 0.0 | ethylene-responsive transcription factor RAP2-13 | ||||
Swissprot | Q9LM15 | 1e-121 | RA213_ARATH; Ethylene-responsive transcription factor RAP2-13 | ||||
TrEMBL | V4KA86 | 0.0 | V4KA86_EUTSA; Uncharacterized protein | ||||
STRING | XP_006416222.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2716 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22190.1 | 4e-96 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10008326m |
Entrez Gene | 18992725 |
Publications ? help Back to Top | |||
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