PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10008306m | ||||||||
Common Name | EUTSA_v10008279mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bHLH | ||||||||
Protein Properties | Length: 304aa MW: 32576 Da PI: 6.4227 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.5 | 5.7e-09 | 156 | 200 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ K + a++ + v+Y+k L Thhalv10008306m 156 HSIAERLRRERIAERIRALQELVPTV-----SKTDRAAMIDEIVDYVKFL 200 99***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-14 | 149 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.025 | 151 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-14 | 153 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-6 | 156 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.1E-10 | 157 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MANNNNPHDN LSDQSPSDDF FEQILGISNF SASSGSGLSG LAGGLSGVGP PPMMLQLGSG 60 DEGNHNHMGA IGAGGPLGFH NQMFPLGLSL DQGKGHGFLK PEGVHGSGKR FQDDVVDNRC 120 SSMKPPMSQP APPMPHQQSS IRPRVRARRG QATDPHSIAE RLRRERIAER IRALQELVPT 180 VSKTDRAAMI DEIVDYVKFL RLQVKVLSMS RLGGAGAVAP LVTEMPLSSS IEDETQGVWE 240 KWSNDGTELQ VAKLMEENVG AAMQLLQSKA LCIMPISLAM AIYHSQPQDT SSSIIKPEMN 300 PPP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 165 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10008306m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353153 | 0.0 | AK353153.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-H10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006418274.1 | 0.0 | transcription factor bHLH7 | ||||
Swissprot | Q93Y00 | 1e-166 | BH007_ARATH; Transcription factor bHLH7 | ||||
TrEMBL | V4MWC8 | 0.0 | V4MWC8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006418274.1 | 0.0 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03040.2 | 1e-146 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10008306m |
Entrez Gene | 18994552 |