PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10008175m | ||||||||
Common Name | EUTSA_v10008175mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 330aa MW: 36277.4 Da PI: 7.1977 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 63.1 | 1.1e-19 | 51 | 156 | 3 | 135 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 g+kdrhsk+ T++ +++a++f+dLqd+LGfd++sk++eWL+++a +i +l++ +++ +a + +++ Thhalv10008175m 51 GGKDRHSKVLTSK----------VTTAIQFYDLQDRLGFDQPSKAVEWLINAASDSISDLPSINTNFD------------------QALSLSKS 116 6788888888876..........89************************************9955555..................22222233 PP TCP 97 skksqksaasalnlak.esrakarararertrekmriknk 135 +s +s++s l+l++ e r kar+rarert++++ ++ + Thhalv10008175m 117 ACSSGTSESSLLSLSRtEIRGKARERARERTAKEKDKDLQ 156 445556666779999999***********99998877654 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-19 | 51 | 149 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 15.511 | 52 | 100 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.766 | 133 | 151 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MEVDDDIDAQ QKQQQQPQSR KQQRISDEDI TGMRNWNNPS SRIIRVSRAS GGKDRHSKVL 60 TSKVTTAIQF YDLQDRLGFD QPSKAVEWLI NAASDSISDL PSINTNFDQA LSLSKSACSS 120 GTSESSLLSL SRTEIRGKAR ERARERTAKE KDKDLQNAQS SFTQLLTGGF DEPNRNWTGG 180 GGSDCFNNPV QLIPNSSSSS LPHFNNNHHR QETSMNQFSF VPDYNFGISS SDSPGAAAIN 240 GGCYSSRGTL QSNSQSLSFL NNNNINQRSI SSSSSSSSPM DSQSISFFMA TPPPLDHHSH 300 QLPAAFDGRL YLYYGEGNRS SEDKGKDRR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-12 | 45 | 101 | 2 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-12 | 45 | 101 | 2 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00169 | DAP | Transfer from AT1G30210 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10008175m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353156 | 0.0 | AK353156.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-I20. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024008427.1 | 0.0 | transcription factor TCP24 | ||||
Refseq | XP_024008428.1 | 0.0 | transcription factor TCP24 | ||||
Swissprot | Q9C758 | 1e-145 | TCP24_ARATH; Transcription factor TCP24 | ||||
TrEMBL | V4KRB8 | 0.0 | V4KRB8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415501.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13840 | 17 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-104 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10008175m |
Entrez Gene | 18992081 |
Publications ? help Back to Top | |||
---|---|---|---|
|