PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10008083m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | SBP | ||||||||
Protein Properties | Length: 349aa MW: 38507.1 Da PI: 9.5628 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 117.1 | 8.8e-37 | 194 | 271 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+y rrhkv e+hska++v+++gl+qrf qqCsrfh lsefD++krsCr+rLa+hn+rrrk ++ Thhalv10008083m 194 RCQAEGCNADLSHAKHYPRRHKVWEFHSKASTVVAAGLSQRFSQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKCNQ 271 6*************************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.1E-32 | 190 | 256 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 28.769 | 192 | 269 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.16E-34 | 193 | 272 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.1E-26 | 195 | 268 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MLDYEWDNPS AIMLSGEEHR HHHQEADPTR AMSIFDPTHH HSNSPYSNIS PPLLSSSFSN 60 QHHLTTVYGH HHHHHITTTN QFHHHSLYDP RTTTTHNNPY ASSDSIYHSS AAASALFSFD 120 HQITGSGSAG SSSYNFLIPK TEVDVVSRPL DFTSSNRIGL NLGAALTSPP PTTTSRLYRR 180 SRPGELGNSL STPRCQAEGC NADLSHAKHY PRRHKVWEFH SKASTVVAAG LSQRFSQQCS 240 RFHLLSEFDN GKRSCRKRLA DHNRRRRKCN QSASIAHDSA KSTPADITTT PKSSNDSGIN 300 RKSSSSPSNA LLSPPTISLE CFRQRQFQTT ASSSTSASSS SNSMFFSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-24 | 195 | 268 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00090 | SELEX | Transfer from AT1G02065 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10008083m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006418484.2 | 0.0 | LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 8 | ||||
Swissprot | Q8GXL3 | 1e-113 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A3P5YM77 | 1e-141 | A0A3P5YM77_BRACM; Uncharacterized protein | ||||
STRING | Bo8g118210.1 | 1e-138 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7010 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 4e-98 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10008083m |
Publications ? help Back to Top | |||
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