PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10008050m
Common NameEUTSA_v10008050mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 354aa    MW: 38109.7 Da    PI: 7.8424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10008050mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.9e-11286331655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  Thhalv10008050m 286 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 331
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.656280330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-14283344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.39E-11284335No hitNo description
Gene3DG3DSA:4.10.280.102.2E-13285343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-8286331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-12286336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MYQSSSSTSS SSQRSSVPGG GGGGGLIRYG SAPGSLLNSV VDEVIGTNGR AGDFNYPPPE  60
NFLGQFFAGA DSSSLRSDST TCVVNSSNGQ KQQLGNINKD LLLDRSYGGF NEISQHKSND  120
LGNSSGSYSL ARQRSSPADL FTYLSGDKNN FSLNQPTSDY NPQGGSNAGR GQSRLKSQLS  180
FTSHDPLSRI SEVNETSVHD GSGHSFSVAS FGAPTDSWDD GSGSIGFTVT TRPTKRSKDM  240
DSGLFSQYSL PSDTSMNYMD NYMQLPEDSV PCKIRAKRGC ATHPRSIAER ERRTRISGKL  300
KKLQDLVPNM DKQTSYSDML DLAVQHIKGL QHQLQNLKKE QENCTCGCSE RPN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10008050m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531730.0AK353173.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417986.10.0transcription factor bHLH128
SwissprotQ8H1020.0BH128_ARATH; Transcription factor bHLH128
TrEMBLE4MXC60.0E4MXC6_EUTHA; mRNA, clone: RTFL01-26-M18
TrEMBLV4KYA50.0V4KYA5_EUTSA; Uncharacterized protein
STRINGXP_006417986.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]