PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007983m
Common NameEUTSA_v10007983mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family RAV
Protein Properties Length: 368aa    MW: 40869 Da    PI: 9.5587
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007983mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.72.4e-1266114155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s++kGV   + +grW A+I++      ++r++lg+f  +eeAa  ++ a+++++g
  Thhalv10007983m  66 SKFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAASSYDIAARRFRG 114
                      79****9888.8*********3.....5*************************98 PP

2B3101.35.7e-32199307196
                      EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                      f+k+ tpsdv+k++rlv+pk++ae+h             + ++++++ + led+ g++W+++++y+++s++yvltkGW++Fvk+++L++gD v 
  Thhalv10007983m 199 FEKTVTPSDVGKLNRLVIPKQHAEKHfplpamttatattNPSPTKGVLINLEDRAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVC 292
                      99*******************************999999777889************************************************* PP

                      EEE-SSSEE..EEEE CS
               B3  82 Fkldgrsefelvvkv 96 
                      F+++   +++l++ +
  Thhalv10007983m 293 FERSTGPDRQLYIDW 307
                      **8766777777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.62E-2566121No hitNo description
PfamPF008471.5E-666114IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-1666122IPR016177DNA-binding domain
SMARTSM003801.7E-2867128IPR001471AP2/ERF domain
PROSITE profilePS5103219.54667122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1967122IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-40193315IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-31194305IPR015300DNA-binding pseudobarrel domain
CDDcd100173.20E-29198296No hitNo description
PfamPF023626.0E-29199307IPR003340B3 DNA binding domain
PROSITE profilePS5086313.888199311IPR003340B3 DNA binding domain
SMARTSM010193.8E-26199311IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEYSCIDDTT STTSESLSTS TPSPKKTTEK LSPPAMRLYR MGSGGSSVVL DSDNGVETES  60
RKLPSSKFKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEEE AASSYDIAAR RFRGRDAVTN  120
FKTPAIDNDG DDAESAFLES HSKAEIVDML RKHTYADELQ QSKRRFLDGN GNGKRCESTT  180
IMTSPHGNDG VLRPREVLFE KTVTPSDVGK LNRLVIPKQH AEKHFPLPAM TTATATTNPS  240
PTKGVLINLE DRAGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKNLRAGDA VCFERSTGPD  300
RQLYIDWKVR SGTELISTPV QTVVRLFGVN IFKPNDVAGE CGGKKRSREV DLFALGCSKK  360
QAIINAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-5819631511122DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007983m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0792811e-140AC079281.4 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete sequence.
GenBankAY0910691e-140AY091069.1 Arabidopsis thaliana putative DNA-binding protein RAV2 (At1g25560) mRNA, complete cds.
GenBankAY1229411e-140AY122941.1 Arabidopsis thaliana putative DNA-binding protein RAV2 (At1g25560) mRNA, complete cds.
GenBankCP0026841e-140CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415886.10.0AP2/ERF and B3 domain-containing transcription repressor TEM1
SwissprotQ9C6M50.0RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLV4KSG60.0V4KSG6_EUTSA; Uncharacterized protein
STRINGXP_006415886.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.10.0RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]