PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10007983m | ||||||||
Common Name | EUTSA_v10007983mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | RAV | ||||||||
Protein Properties | Length: 368aa MW: 40869 Da PI: 9.5587 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.7 | 2.4e-12 | 66 | 114 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa ++ a+++++g Thhalv10007983m 66 SKFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAASSYDIAARRFRG 114 79****9888.8*********3.....5*************************98 PP | |||||||
2 | B3 | 101.3 | 5.7e-32 | 199 | 307 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ tpsdv+k++rlv+pk++ae+h + ++++++ + led+ g++W+++++y+++s++yvltkGW++Fvk+++L++gD v Thhalv10007983m 199 FEKTVTPSDVGKLNRLVIPKQHAEKHfplpamttatattNPSPTKGVLINLEDRAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVC 292 99*******************************999999777889************************************************* PP EEE-SSSEE..EEEE CS B3 82 Fkldgrsefelvvkv 96 F+++ +++l++ + Thhalv10007983m 293 FERSTGPDRQLYIDW 307 **8766777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.62E-25 | 66 | 121 | No hit | No description |
Pfam | PF00847 | 1.5E-6 | 66 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-16 | 66 | 122 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-28 | 67 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.546 | 67 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-19 | 67 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-40 | 193 | 315 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-31 | 194 | 305 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.20E-29 | 198 | 296 | No hit | No description |
Pfam | PF02362 | 6.0E-29 | 199 | 307 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.888 | 199 | 311 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-26 | 199 | 311 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MEYSCIDDTT STTSESLSTS TPSPKKTTEK LSPPAMRLYR MGSGGSSVVL DSDNGVETES 60 RKLPSSKFKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEEE AASSYDIAAR RFRGRDAVTN 120 FKTPAIDNDG DDAESAFLES HSKAEIVDML RKHTYADELQ QSKRRFLDGN GNGKRCESTT 180 IMTSPHGNDG VLRPREVLFE KTVTPSDVGK LNRLVIPKQH AEKHFPLPAM TTATATTNPS 240 PTKGVLINLE DRAGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKNLRAGDA VCFERSTGPD 300 RQLYIDWKVR SGTELISTPV QTVVRLFGVN IFKPNDVAGE CGGKKRSREV DLFALGCSKK 360 QAIINAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 6e-58 | 196 | 315 | 11 | 122 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00024 | PBM | Transfer from AT1G25560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10007983m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079281 | 1e-140 | AC079281.4 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete sequence. | |||
GenBank | AY091069 | 1e-140 | AY091069.1 Arabidopsis thaliana putative DNA-binding protein RAV2 (At1g25560) mRNA, complete cds. | |||
GenBank | AY122941 | 1e-140 | AY122941.1 Arabidopsis thaliana putative DNA-binding protein RAV2 (At1g25560) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-140 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415886.1 | 0.0 | AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
Swissprot | Q9C6M5 | 0.0 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | V4KSG6 | 0.0 | V4KSG6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415886.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 0.0 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10007983m |
Entrez Gene | 18992424 |