PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007912m
Common NameEUTSA_v10007912mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 384aa    MW: 42142.5 Da    PI: 8.5489
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007912mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.8e-112045126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C+f++rtG C yG++C+++H+
  Thhalv10007912m 20 PGERDCQFYLRTGLCGYGSSCRYNHP 45
                     5789*********************9 PP
2zf-CCCH36.67.4e-126589327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     ++ C +f++tG CkyG++Ck++H++
  Thhalv10007912m 65 QPDCEYFLKTGACKYGSTCKYHHPK 89
                     789********************96 PP
3zf-CCCH38.61.8e-12109134227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C++++rtGtC++G  CkF+H++
  Thhalv10007912m 109 GEKPCPYYLRTGTCRFGVACKFHHPQ 134
                      689*********************97 PP
4zf-CCCH39.68.5e-13236259326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +++Crff+ tGtCkyGd Ck++H+
  Thhalv10007912m 236 QPECRFFMNTGTCKYGDDCKYNHP 259
                      689********************8 PP
5zf-CCCH27.94.2e-09280306127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C +f  +G+Ck+G++CkF H++
  Thhalv10007912m 280 PGQPTCGNFKSYGFCKFGPNCKFDHSM 306
                      57899********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-51946IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3521947IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-82145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-52346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-42545IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-66289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8966290IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-96589IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-66790IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-46888IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-7106136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939107135IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6107134IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10109134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-6111134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413233261IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-7234260IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10236259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-6236260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5239258IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4279306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5279307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.854279307IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-7281305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4285306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MKVNENGMAQ SNPTLYPDRP GERDCQFYLR TGLCGYGSSC RYNHPTHLPQ GVMYYNEELP  60
ERIGQPDCEY FLKTGACKYG STCKYHHPKD RNGAEPVLFN VLSLPMRQGE KPCPYYLRTG  120
TCRFGVACKF HHPQPDNGHS TAYGMSSFPS SGLHYAGGLT MMPTYGTLPR PQVPQSYVPV  180
MVSPSQGLLP PQSWATYMAA SNSMYNVKNQ PFYSGSSASM PMAVTLNGGL PERSEQPECR  240
FFMNTGTCKY GDDCKYNHPG ARISPPPPNL INSFILPMRP GQPTCGNFKS YGFCKFGPNC  300
KFDHSMQPYP GLTMPSSLPA PNASRVSTHQ KISPSPSRSN SKSLSNKKPD MKKESSDAEK  360
PGDGSAQLSN SEVQDLSEHS SSP*
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007912m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934340.0AB493434.1 Arabidopsis thaliana At1g04990 mRNA for hypothetical protein, partial cds, clone: RAAt1g04990.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009087.10.0zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ94AD90.0C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLV4KF810.0V4KF81_EUTSA; Uncharacterized protein
STRINGXP_006418072.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.20.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]