PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10007887m

Common Name

EUTSA_v10007882mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

SBP

Protein Properties

Length: 389aa MW: 43090.9 Da PI: 8.3726

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10007887m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.8	1e-40	175	251	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq++gCe dls+ak+yhr+h+vCe+hsk+p+v+vsgle+rfCqqCsrfh++sefDe+krsCr+rL++hn+rrrk+q Thhalv10007887m 175 RCQIDGCELDLSSAKDYHRKHRVCEKHSKSPKVTVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQ 251 6**************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.3E-32	169	237	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.197	173	250	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.96E-37	175	251	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.2E-31	176	249	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MDCNMRSPLP WDWENLIMSN PSKTESDRKQ LSTEWETEKG EGIESIVPYF SSFEKVCSGS 60 ATSFWQTDVS KSSQSTSINS SSPEVKVCKA ASESSPGVSC SNIDFVQVKA STAPEVSAAS 120 AESDLCLELG KRTYSEELWG RKNNDISAVS MKLLTPSVVA RKKSKPCGQS IQISRCQIDG 180 CELDLSSAKD YHRKHRVCEK HSKSPKVTVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL 240 SHHNARRRKP QGVFPLNPER MYDRRQTNMA WNGLSLNSRS EEKYAWGTTY DTKPAQTESG 300 FTLSFQRGNG SEEQLFASSS HSFSAHQTSG GFSAGKSKFQ LHGEGVGECS GVLHESQDFH 360 RALSLLSTSS DSHAQPVSLL FSYDGVPK*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MDCNMRSPLP WDWENLIMSN PSKTESDRKQ LSTEWETEKG EGIESIVPYF SSFEKVCSGS  60
ATSFWQTDVS KSSQSTSINS SSPEVKVCKA ASESSPGVSC SNIDFVQVKA STAPEVSAAS  120
AESDLCLELG KRTYSEELWG RKNNDISAVS MKLLTPSVVA RKKSKPCGQS IQISRCQIDG  180
CELDLSSAKD YHRKHRVCEK HSKSPKVTVS GLERRFCQQC SRFHAVSEFD EKKRSCRKRL  240
SHHNARRRKP QGVFPLNPER MYDRRQTNMA WNGLSLNSRS EEKYAWGTTY DTKPAQTESG  300
FTLSFQRGNG SEEQLFASSS HSFSAHQTSG GFSAGKSKFQ LHGEGVGECS GVLHESQDFH  360
RALSLLSTSS DSHAQPVSLL FSYDGVPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-27	176	249	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	248	KKRSCRKRLSHHNARRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00161	DAP	Transfer from AT1G27360	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10007887m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353392	0.0	AK353392.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-42-E20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415773.1	0.0	squamosa promoter-binding-like protein 11
Refseq	XP_024008490.1	0.0	squamosa promoter-binding-like protein 11
Refseq	XP_024008491.1	0.0	squamosa promoter-binding-like protein 11
Swissprot	Q9FZK0	0.0	SPL11_ARATH; Squamosa promoter-binding-like protein 11
TrEMBL	E4MXZ5	0.0	E4MXZ5_EUTHA; mRNA, clone: RTFL01-42-E20
TrEMBL	V4MQY3	0.0	V4MQY3_EUTSA; Uncharacterized protein
STRING	XP_006415772.1	0.0	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27360.4	0.0	squamosa promoter-like 11

Link Out ? help Back to Top
Phytozome	Thhalv10007887m
Entrez Gene	18992324

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Stief A, et al. Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors. Plant Cell, 2014. 26(4): p. 1792-1807 [PMID:24769482] Liu J, et al. The RhoGAP SPIN6 associates with SPL11 and OsRac1 and negatively regulates programmed cell death and innate immunity in rice. PLoS Pathog., 2015. 11(2): p. e1004629 [PMID:25658451] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584]