PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10007832m

Common Name

EUTSA_v10007832mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

SBP

Protein Properties

Length: 396aa MW: 43810.7 Da PI: 8.0985

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10007832m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.5	1.1e-39	174	250	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq++gCe dls+ak+yhr+h+vCe+hsk+p+v+v gle+rfCqqCsr h++sefDe+krsCr+rL++hn+rrrk+q Thhalv10007832m 174 RCQIDGCELDLSSAKDYHRKHRVCEKHSKCPKVIVGGLERRFCQQCSRLHAVSEFDEKKRSCRKRLSHHNARRRKPQ 250 6**************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.7E-32	167	236	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.906	172	249	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.79E-37	173	252	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.8E-30	175	248	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010358	Biological Process	leaf shaping
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MDCNMISPMW EWENLIMSNL SKTENDKKPP SIEWETEKGE GIESIFPCFP GLERVSSVSA 60 TSFWQTAVSK SSQSASTNSS SPEVKQTQLA SECSPGDSCS NIDFVQVKAS TATDVYGASA 120 ESDLCLKLGK QTYSEEFWGR NSNDISAVST KLLTPSVVAR KKSKSCGQSV QVPRCQIDGC 180 ELDLSSAKDY HRKHRVCEKH SKCPKVIVGG LERRFCQQCS RLHAVSEFDE KKRSCRKRLS 240 HHNARRRKPQ GGFPMNSERV YDRRQQTNML WNGLSLNTRS EEKYAWSTTC DTNPGQMESG 300 FTLSFQRGHG SEEHLHASNS RSFSAYQTSG GFSAGKSNSQ LPGKGVGEYS GGLHESQEFY 360 SALSLLSTSS DSHGTKHNPM VEPQPIHGTF PTHFI*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MDCNMISPMW EWENLIMSNL SKTENDKKPP SIEWETEKGE GIESIFPCFP GLERVSSVSA  60
TSFWQTAVSK SSQSASTNSS SPEVKQTQLA SECSPGDSCS NIDFVQVKAS TATDVYGASA  120
ESDLCLKLGK QTYSEEFWGR NSNDISAVST KLLTPSVVAR KKSKSCGQSV QVPRCQIDGC  180
ELDLSSAKDY HRKHRVCEKH SKCPKVIVGG LERRFCQQCS RLHAVSEFDE KKRSCRKRLS  240
HHNARRRKPQ GGFPMNSERV YDRRQQTNML WNGLSLNTRS EEKYAWSTTC DTNPGQMESG  300
FTLSFQRGHG SEEHLHASNS RSFSAYQTSG GFSAGKSNSQ LPGKGVGEYS GGLHESQEFY  360
SALSLLSTSS DSHGTKHNPM VEPQPIHGTF PTHFI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-25	175	248	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	247	KKRSCRKRLSHHNARRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10007832m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415770.1	0.0	squamosa promoter-binding-like protein 10
Refseq	XP_006415771.1	0.0	squamosa promoter-binding-like protein 10
Refseq	XP_024009069.1	0.0	squamosa promoter-binding-like protein 10
Swissprot	Q8S9L0	0.0	SPL10_ARATH; Squamosa promoter-binding-like protein 10
TrEMBL	V4L301	0.0	V4L301_EUTSA; Uncharacterized protein
STRING	XP_006415770.1	0.0	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.4	0.0	squamosa promoter binding protein-like 10

Link Out ? help Back to Top
Phytozome	Thhalv10007832m
Entrez Gene	18992323

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Yu N,Niu QW,Ng KH,Chua NH The role of miR156/SPLs modules in Arabidopsis lateral root development. Plant J., 2015. 83(4): p. 673-85 [PMID:26096676] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584] Gao R,Wang Y,Gruber MY,Hannoufa A miR156/SPL10 Modulates Lateral Root Development, Branching and Leaf Morphology in Arabidopsis by Silencing AGAMOUS-LIKE 79. Front Plant Sci, 2017. 8: p. 2226 [PMID:29354153] Dotto M,Gómez MS,Soto MS,Casati P UV-B radiation delays flowering time through changes in the PRC2 complex activity and miR156 levels in Arabidopsis thaliana. Plant Cell Environ., 2018. 41(6): p. 1394-1406 [PMID:29447428]