PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10007832m | ||||||||
Common Name | EUTSA_v10007832mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | SBP | ||||||||
Protein Properties | Length: 396aa MW: 43810.7 Da PI: 8.0985 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.5 | 1.1e-39 | 174 | 250 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq++gCe dls+ak+yhr+h+vCe+hsk+p+v+v gle+rfCqqCsr h++sefDe+krsCr+rL++hn+rrrk+q Thhalv10007832m 174 RCQIDGCELDLSSAKDYHRKHRVCEKHSKCPKVIVGGLERRFCQQCSRLHAVSEFDEKKRSCRKRLSHHNARRRKPQ 250 6**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.7E-32 | 167 | 236 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.906 | 172 | 249 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.79E-37 | 173 | 252 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.8E-30 | 175 | 248 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MDCNMISPMW EWENLIMSNL SKTENDKKPP SIEWETEKGE GIESIFPCFP GLERVSSVSA 60 TSFWQTAVSK SSQSASTNSS SPEVKQTQLA SECSPGDSCS NIDFVQVKAS TATDVYGASA 120 ESDLCLKLGK QTYSEEFWGR NSNDISAVST KLLTPSVVAR KKSKSCGQSV QVPRCQIDGC 180 ELDLSSAKDY HRKHRVCEKH SKCPKVIVGG LERRFCQQCS RLHAVSEFDE KKRSCRKRLS 240 HHNARRRKPQ GGFPMNSERV YDRRQQTNML WNGLSLNTRS EEKYAWSTTC DTNPGQMESG 300 FTLSFQRGHG SEEHLHASNS RSFSAYQTSG GFSAGKSNSQ LPGKGVGEYS GGLHESQEFY 360 SALSLLSTSS DSHGTKHNPM VEPQPIHGTF PTHFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-25 | 175 | 248 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 230 | 247 | KKRSCRKRLSHHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10007832m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006415770.1 | 0.0 | squamosa promoter-binding-like protein 10 | ||||
Refseq | XP_006415771.1 | 0.0 | squamosa promoter-binding-like protein 10 | ||||
Refseq | XP_024009069.1 | 0.0 | squamosa promoter-binding-like protein 10 | ||||
Swissprot | Q8S9L0 | 0.0 | SPL10_ARATH; Squamosa promoter-binding-like protein 10 | ||||
TrEMBL | V4L301 | 0.0 | V4L301_EUTSA; Uncharacterized protein | ||||
STRING | XP_006415770.1 | 0.0 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 0.0 | squamosa promoter binding protein-like 10 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10007832m |
Entrez Gene | 18992323 |
Publications ? help Back to Top | |||
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