PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007764m
Common NameEUTSA_v10007764mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 413aa    MW: 44736.4 Da    PI: 5.0097
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007764mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-06365387426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C +f  t  C++G++C++ H+
  Thhalv10007764m 365 KPCLYFNTTRGCRHGANCSYQHD 387
                      69********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.07361389IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4365388IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MRALHKSKRV SWPPDFKLCQ VRLFISEDSP SQVGSESQDH LQAKSSCASH PSDDNLPPGF  60
GGSLSPNESQ IKLSDIPVIK WKCSVRILFD EELRVAAGDE SKEVEAQNQR ELRVLEAFYP  120
GASAIPTNPA VPADVENSDR DDQQTIVIPI LPVEDDDTTT DSASDFSTQS GVDVGTAPSI  180
TDENQSSAST FPAGSEIMAA LSAISNSKEQ GCSMIDQDLL IKILSNPKLV ENLVANCGGA  240
GSVSSNASSL YPSSTPEANG VVTTTPACSN GQYYPQPTVT HIPPMVYHPP APSDQPNYGA  300
PPARDASYYK SLIQQHGGER QETPQAQQHL GYRYNLQPGG GPNPEMVNSN NNNQRPRDSK  360
PKIMKPCLYF NTTRGCRHGA NCSYQHDATA YQPRNINNSE MPSAKRMRFD RD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007764m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2215790.0AK221579.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-83-G10.
GenBankBT0255570.0BT025557.1 Arabidopsis thaliana At1g19860 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416457.10.0zinc finger CCCH domain-containing protein 6 isoform X2
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLV4KAT90.0V4KAT9_EUTSA; Uncharacterized protein
STRINGXP_006416457.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]