PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007709m
Common NameEUTSA_v10007709mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 426aa    MW: 48196.7 Da    PI: 6.4487
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007709mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.2e-52241511128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      l pGfrFhPtdeelv++yLk+kv++++l++ e i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s
  Thhalv10007709m  24 LLPGFRFHPTDEELVSFYLKRKVQHHPLSI-ELIRQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYS 116
                      579***************************.89***************7777889*************************************** PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Thhalv10007709m 117 SeGNKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 151
                      956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5920183IPR003441NAC domain
PROSITE profilePS5100557.53224183IPR003441NAC domain
PfamPF023651.6E-2526151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAADPSGNMG ERSDDGDQKM EEVLLPGFRF HPTDEELVSF YLKRKVQHHP LSIELIRQLD  60
IYKYDPWDLP KFAMTGEKEW YFYCPRDRKY RNSSRPNRVT GAGFWKATGT DRPIYSSEGN  120
KCIGLKKSLV FYKGRAAKGV KTDWMMHEFR LPSLSDPSPS SKRFFDSPVS PNDSWAICRI  180
FKKTNTTTLR ALSHSFVSSL PSETSIDTMS DQKPSYTSHF SSDKILKTSS HFQFHHEDVN  240
TSKTSTSTTP SVATISPFSY LDITSYEKPT NVFNPVSSLD QQYLTNLFLA TQETPPQFPG  300
LASSNAFPSF LLNTSSSDST FLGEYTSQID ISAVLAQEQC PALVSLPQEY QEKRFEGNVE  360
MKNMRGSSED HHSQCGTPQF GDYVSRIDEN HRQHQELNQN MTLLENYYSS LSSINGDLPV  420
CFSTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-562418717169NO APICAL MERISTEM PROTEIN
1ut4_B1e-562418717169NO APICAL MERISTEM PROTEIN
1ut7_A1e-562418717169NO APICAL MERISTEM PROTEIN
1ut7_B1e-562418717169NO APICAL MERISTEM PROTEIN
3swm_A1e-562418720172NAC domain-containing protein 19
3swm_B1e-562418720172NAC domain-containing protein 19
3swm_C1e-562418720172NAC domain-containing protein 19
3swm_D1e-562418720172NAC domain-containing protein 19
3swp_A1e-562418720172NAC domain-containing protein 19
3swp_B1e-562418720172NAC domain-containing protein 19
3swp_C1e-562418720172NAC domain-containing protein 19
3swp_D1e-562418720172NAC domain-containing protein 19
4dul_A1e-562418717169NAC domain-containing protein 19
4dul_B1e-562418717169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007709m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0055080.0AC005508.1 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007889.10.0protein FEZ
SwissprotQ9ZVH00.0FEZ_ARATH; Protein FEZ
TrEMBLV4KWA80.0V4KWA8_EUTSA; Uncharacterized protein
STRINGXP_006415974.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.10.0NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]