PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10007685m
Common NameEUTSA_v10007685mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family CO-like
Protein Properties Length: 434aa    MW: 48676.4 Da    PI: 5.1284
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10007685mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.21.7e-081356340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+ + + +++++C  ++ +lC++C +  H+       H++v
  Thhalv10007685m 13 ARACDSCVKRRARWYCAADDAFLCQSCDSLVHSAnplarrHERV 56
                     578*****************************657888888876 PP
2CCT682.5e-23375418144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Thhalv10007685m 375 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 418
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.8081158IPR000315B-box-type zinc finger
SMARTSM003368.0E-101158IPR000315B-box-type zinc finger
PfamPF006433.6E-71356IPR000315B-box-type zinc finger
CDDcd000215.62E-101458No hitNo description
PROSITE profilePS5101716.083375417IPR010402CCT domain
PfamPF062037.3E-18375417IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MKSVANAVGA KTARACDSCV KRRARWYCAA DDAFLCQSCD SLVHSANPLA RRHERVRLKS  60
SASPKHSNHN HNHSASSSSP LHEAATWHHG FTRKARTPRG SGKKSHPSIF HDLVPEISVE  120
DQTDSYELEE QLICQVPVLD PMVAEQFLND VVEPKIEFPT MRSGVMIHED QEDEDNNAES  180
CLNGFFPTDM ELEEFAADVE ILLGRGLDTE SYAIEELGLS SNSEMFKIEK DELETEEETK  240
AIMNMGIICD EDRDDDRDGM VPFELSFDYE SHKTTTYEEE EVIIKKVEKS SLGECIKVEE  300
EEQKNVLMLR LNYDSVISTW GGQGPPWTSG DPPELDIDIS GWPAISMVGN GGESHHQKQY  360
VGGCLPSSGF GDGGREARVS RYREKRRTRL FSKKIRYEVR KLNAEKRPRM KGRFVKRASL  420
AVSAANSPIG LNY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385401RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10007685m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529720.0AK352972.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-J08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415872.10.0zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD00.0COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLE4MWS50.0E4MWS5_EUTHA; mRNA, clone: RTFL01-09-J08
TrEMBLV4K9920.0V4K992_EUTSA; Uncharacterized protein
STRINGXP_006415872.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]