PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006969m
Common NameEUTSA_v10006969mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 696aa    MW: 77719.2 Da    PI: 7.0372
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006969mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.3e-192576556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +++t++q+++Le+ F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  Thhalv10006969m 25 HRHTPHQIQRLESTFNECQHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQKK 76
                     689**********************************************988 PP
2START146.23e-462154362206
                      HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddke...qWdetlakaetl 82 
                      +a +a++el+++ + +ep+W k     e++n + +  +f++s +        + ea+r sgvv+ ++++lv  l+d+ +    +   +a  +tl
  Thhalv10006969m 215 IAVTAMEELLRLTQTNEPLWIKTDgcrEILNLESYENIFSRSSSrggknhnLRKEASRFSGVVFTNAMTLVDMLMDSVKsaeLFPSIVATSKTL 308
                      6889*******************99**************9998899***9999************************999999*********** PP

                      EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
            START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                      +viss        al+lm  elq+lsplvp R+f  +Ry++q + g+w+iv vS + +q+ + +    R+ ++pSg+li+++sng+skv+wveh
  Thhalv10006969m 309 AVISSSlrgnraDALHLMLEELQVLSPLVPtREFCGLRYCQQIQHGTWAIVNVSYEFPQFIS-H---SRSYRYPSGCLIQDMSNGYSKVIWVEH 398
                      ************************************************************98.4...56666********************** PP

                      EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 170 vdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      vd +++ p h++++  v++gla+ga +w atlqr ce+
  Thhalv10006969m 399 VDTEEQEPvHEMFKDNVRQGLAFGAERWIATLQRMCER 436
                      ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.21E-19778IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-21772IPR009057Homeodomain-like
PROSITE profilePS5007117.6861878IPR001356Homeobox domain
SMARTSM003893.3E-181982IPR001356Homeobox domain
CDDcd000861.08E-172579No hitNo description
PfamPF000461.1E-162576IPR001356Homeobox domain
PROSITE patternPS0002705376IPR017970Homeobox, conserved site
PROSITE profilePS5084846.901205439IPR002913START domain
SuperFamilySSF559611.06E-29206438No hitNo description
CDDcd088751.16E-101209435No hitNo description
SMARTSM002342.7E-35214436IPR002913START domain
PfamPF018526.1E-38215436IPR002913START domain
Gene3DG3DSA:3.30.530.201.8E-7269434IPR023393START-like domain
SuperFamilySSF559613.43E-18458684No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010091Biological Processtrichome branching
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MEFLGDSQNH DSSEMDKRKK KKRFHRHTPH QIQRLESTFN ECQHPDEKQR LQLSRELGLA  60
PRQIKFWFQN RRTQKKAQHE RADNCALKEE NDKIRCENIA IREAIKHAIC PNCGDSPVNE  120
DSYFDEQKLR IENAQLRQEL ERVSSIAAKF IGPLAHLPPI LNPMHISPSE LFHSGPSLDF  180
DLLPGSCSSM ATVPNLPSQP NLVLSDIDKS LMTSIAVTAM EELLRLTQTN EPLWIKTDGC  240
REILNLESYE NIFSRSSSRG GKNHNLRKEA SRFSGVVFTN AMTLVDMLMD SVKSAELFPS  300
IVATSKTLAV ISSSLRGNRA DALHLMLEEL QVLSPLVPTR EFCGLRYCQQ IQHGTWAIVN  360
VSYEFPQFIS HSRSYRYPSG CLIQDMSNGY SKVIWVEHVD TEEQEPVHEM FKDNVRQGLA  420
FGAERWIATL QRMCERFKTL LEPATSSRDL KGVIPSLEGK RSIMRLSQRM VSNFCLSVGT  480
SNNNRSTVIS GLDEFGIRVT SYKSQHEPNG MVLCAATSFW LPISPQNVFN FLKDERTRPQ  540
WDVLSNGNSV QEVAHIANGS HPGNCISVLR GFNASSSQNN MLILQESCVD SSGSLVVYTP  600
VDLPALNMAM SGQDTSYVPI LPSGFAVSPD GTRNNQLAEH KVEGGGGSLI TVGFQIMVSS  660
LQSAKLNVES METVNNLIST TVQQIKTTLN CPSTA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622KRKKKKR
21722RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as negative regulator of trichome branching in association with HDG11 (PubMed:16778018). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). Acts as positive regulator of SCL18/LAS expression (PubMed:25358340). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:25358340, ECO:0000269|PubMed:25564655}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006969m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934650.0AB493465.1 Arabidopsis thaliana At1g17920 mRNA for hypothetical protein, partial cds, clone: RAAt1g17920.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416656.20.0homeobox-leucine zipper protein HDG12
SwissprotQ9LMT80.0HDG12_ARATH; Homeobox-leucine zipper protein HDG12
TrEMBLV4KUN50.0V4KUN5_EUTSA; Uncharacterized protein
STRINGXP_006416656.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30042665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.10.0homeodomain GLABROUS 12
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]