PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006934m
Common NameEUTSA_v10006934mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 724aa    MW: 79651.9 Da    PI: 5.9304
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006934mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1967123157
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  Thhalv10006934m  67 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 123
                      688999************************************************995 PP
2START222.11.8e-692544672206
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                      la +a++el+++a+++e +W++++  ++++e++++f+++ +     +++ea+r+s+vv+m++++ ve+l+d++ qW+  +a    +a+tl+v+s
  Thhalv10006934m 254 LAVAAMEELMRMAQVDETLWKSLV--LDEEEYTRTFPRGIGpkpagFRTEASRESAVVIMNHVNIVEILMDVN-QWSMVFAgmvsRAMTLAVLS 344
                      6789********************..************999********************************.******************** PP

                      TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
            START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                      +g      galq+m+ae+q++splvp R+ +f+Ry++q+ +g+w++vd+S+ds q++p     vR++++ Sg+li++++ng+skvtwvehv+++
  Thhalv10006934m 345 TGvagnynGALQVMTAEFQVPSPLVPtRETYFARYCKQQADGSWAVVDISLDSLQPNPP----VRCRRRASGCLIQEMPNGYSKVTWVEHVEVE 434
                      **********************************************************8....******************************* PP

                      SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                      +r +h+l++++v++g+a+gak+wva l+rqce+
  Thhalv10006934m 435 DRGVHNLYKHMVSTGHAFGAKRWVAILDRQCER 467
                      *******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-2245122IPR009057Homeodomain-like
SuperFamilySSF466893.72E-1955124IPR009057Homeodomain-like
PROSITE profilePS5007116.47164124IPR001356Homeobox domain
SMARTSM003891.6E-1865128IPR001356Homeobox domain
PfamPF000463.2E-1767122IPR001356Homeobox domain
CDDcd000868.16E-1967125No hitNo description
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PROSITE profilePS5084842.295244470IPR002913START domain
SuperFamilySSF559611.73E-33245469No hitNo description
CDDcd088756.87E-124248466No hitNo description
SMARTSM002347.7E-62253467IPR002913START domain
PfamPF018526.8E-62254467IPR002913START domain
Gene3DG3DSA:3.30.530.206.3E-5344434IPR023393START-like domain
SuperFamilySSF559612.05E-26486715No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MFEPNMLLAA INNSDSNNHN YNHEDNNNNN EGFLRDDEFD SANTKSGSEN QEGGSGNDQD  60
PHHPNKKKRY HRHTQLQIQE MEAFFKECPH PDDKQRKQLS RELGLEPLQV KFWFQNKRTQ  120
MKNHHERHEN SHLRAENEKL RGDNLRYREA LANASCPNCG GPTAIGEMSF DEHQLRLENA  180
RLREEIDRIS AIAAKYVGKP VSNYPLMSPP PLPPRPLELA MGNLGGDVYG NNPTDLFKSI  240
SAPTESDKPV IIDLAVAAME ELMRMAQVDE TLWKSLVLDE EEYTRTFPRG IGPKPAGFRT  300
EASRESAVVI MNHVNIVEIL MDVNQWSMVF AGMVSRAMTL AVLSTGVAGN YNGALQVMTA  360
EFQVPSPLVP TRETYFARYC KQQADGSWAV VDISLDSLQP NPPVRCRRRA SGCLIQEMPN  420
GYSKVTWVEH VEVEDRGVHN LYKHMVSTGH AFGAKRWVAI LDRQCERLAS VMATNISTGE  480
VGVITNQEGR RSMLKLAERM VISFCAGVSA STAHTWTTLS GTGAEDVRVM TRKSVDDRGR  540
PPGIVLSAAT SFWIPVPPKR VFDFLRDENS RNEWDILSNG GVVQEMAHIA NGRDTGNCVS  600
LLRVNSANSS QSNMLILQES CTDPTASFVI YAPVDIVAMN IVLNGGDPDY VALLPSGFAI  660
LPDGNANGGA SGGDGGSLLT VAFQILVDSV PTAKLSLGSV ATVNNLIACT VERIKASMSC  720
ETA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006934m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418050.10.0homeobox-leucine zipper protein HDG2
RefseqXP_024008152.10.0homeobox-leucine zipper protein HDG2
RefseqXP_024008153.10.0homeobox-leucine zipper protein HDG2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLV4L9E20.0V4L9E2_EUTSA; Uncharacterized protein
STRINGXP_006418050.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2