PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006868m
Common NameEUTSA_v10006868mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 773aa    MW: 86347.7 Da    PI: 5.3965
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006868mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.66.1e-1153937631373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL+ cA+avs +d + a+++L +++e++sp g+  +Rla+yf++ L+arla++++++y al++++ts    ++ l+a++++  v+P+ k +
  Thhalv10006868m 393 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYISVCPFKKAA 483
                      5789**************************************************************9999...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                       + aN+ I++ +++++++HiiDf+is+G+QWpaL++ L+ Rp+gpp+lRiTg++ p+ g   +e ++etg+rLa+++++ +vpfe+n+ +a+++
  Thhalv10006868m 484 IIFANHSIMRLTANANMIHIIDFGISYGFQWPALIHRLSFRPGGPPKLRITGIELPQRGfrPAEGVQETGHRLARYCQRYNVPFEYNA-IAQKW 576
                      *********************************************************99*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e++++e+L++++gE ++Vn+ ++ ++llde+v ++s+rd vL+l+++ +P+v++ +    ++n++ F++rf eal +ysalfd+ ++kl re+e
  Thhalv10006868m 577 ETIKVEDLKIQQGEFVVVNSLFRFKNLLDETVVVNSPRDVVLNLIRKAKPDVFIPAILSGSYNAPFFVTRFREALFHYSALFDMCDSKLTREDE 670
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       r + E+e+ grei+nvvaceg+er+er et+++W++r+ +aGF+++pl+++ +++ kl +++ +++ + ++++ ++l++gWk+r +++ S W
  Thhalv10006868m 671 MRLMFEKEFYGREIMNVVACEGTERVERPETYKQWQARVIRAGFRQLPLEKELMQNLKLKIENGYDKNFDIDQNGNWLLQGWKGRIVYASSIW 763
                      *****************************************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0109501220IPR001579Glycoside hydrolase, chitinase active site
PROSITE profilePS5098567.136367744IPR005202Transcription factor GRAS
PfamPF035142.1E-112393763IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MGSYSGGFHG SLDGFDFDSE FDDLPGSNQT LGLANGFYLD DPLLNFASLD HSSALSETYP  60
HNSNKSAPAD PLSSPSDDAD FSDSVLKYIS QVLMEEDMEE KPCMFHDALA LQAAEKSLYE  120
ALGEKYPSSS SMDHRAYQEK LADDSPDGYC SAGGFSDYAS TTTTTSSDSH WSVDGLENRP  180
SWLQTPIPSN FVFQSTSKLN SVTGGGNSTV SGSGFGDDLI SSMFKDSELA MQFKRGVEEA  240
SKFLPKSSQL FIDVENYIPK NPGFKESGSE VFVKTEKKEE TEHHNSAAPP PPPNRLTGKK  300
SHWRDEDEDS VQERSTKQSA VYVEETELSE MFDKILLCGS RQPVCITEQK FPTEPAKVET  360
TQQTVNGAKS RGNKSTANTN ISINDSKKET ADLRTLLVLC AQAVSVDDRR TANEMLRQIR  420
EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYISVCPFK  480
KAAIIFANHS IMRLTANANM IHIIDFGISY GFQWPALIHR LSFRPGGPPK LRITGIELPQ  540
RGFRPAEGVQ ETGHRLARYC QRYNVPFEYN AIAQKWETIK VEDLKIQQGE FVVVNSLFRF  600
KNLLDETVVV NSPRDVVLNL IRKAKPDVFI PAILSGSYNA PFFVTRFREA LFHYSALFDM  660
CDSKLTREDE MRLMFEKEFY GREIMNVVAC EGTERVERPE TYKQWQARVI RAGFRQLPLE  720
KELMQNLKLK IENGYDKNFD IDQNGNWLLQ GWKGRIVYAS SIWVPSSSSS SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-5240076725381Protein SCARECROW
5b3h_D8e-5240076725381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006868m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529580.0AK352958.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-F16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417795.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLV4L8Q20.0V4L8Q2_EUTSA; Uncharacterized protein
STRINGXP_006417795.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]