PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006792m
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92557.1 Da    PI: 6.5826
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006792mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.6e-192381357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  Thhalv10006792m 23 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilcNIEPRQIKVWFQNRRCREKQ 81
                     5678*****************************************************97 PP
2START170.79.8e-541723802205
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++++ve+l d++  W ++++ +etl vi +g  g+++l
  Thhalv10006792m 172 IAEETLAEFLCKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVSLEPMKVVEILKDRP-SWFRDCRCVETLSVIPTGngGTIEL 264
                      7899******************************************************9999998888.************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++ +a+++l++ Rdf+++Ry+ +l++g++v+++ S++s +  p+   sss+vRa++l Sg+li+p+++g+s +++v+hvdl+ ++++++lr+
  Thhalv10006792m 265 VNTQIYAPTTLAAaRDFWTLRYSTSLEDGSYVVCEKSLTSATGGPNgplSSSFVRAKMLSSGFLIRPCDGGGSIIHIVDHVDLDVSSVPEVLRP 358
                      *********************************************99*********************************************** PP

                      HHHHHHHHHHHHHHHHTXXXXX CS
            START 184 lvksglaegaktwvatlqrqce 205
                      l++s+ + ++k++va+l++ ++
  Thhalv10006792m 359 LYESSKILAQKMTVAALRHVRQ 380
                      *****************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-19681IPR009057Homeodomain-like
PROSITE profilePS5007115.4511882IPR001356Homeobox domain
SMARTSM003894.2E-162086IPR001356Homeobox domain
SuperFamilySSF466891.45E-162284IPR009057Homeodomain-like
CDDcd000865.86E-172383No hitNo description
PfamPF000462.5E-162481IPR001356Homeobox domain
CDDcd146863.23E-675114No hitNo description
PROSITE profilePS5084825.192162390IPR002913START domain
CDDcd088758.12E-70166382No hitNo description
SMARTSM002342.7E-50171381IPR002913START domain
SuperFamilySSF559611.65E-34171383No hitNo description
PfamPF018527.7E-51172380IPR002913START domain
Gene3DG3DSA:3.30.530.209.7E-19207376IPR023393START-like domain
PfamPF086701.0E-48696842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009880Biological Processembryonic pattern specification
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MMAHHHHSMD DRDSPDKGFD SGKYVRYTPE QVEALERVYA ECPKPSSLRR QQLIRECPIL  60
CNIEPRQIKV WFQNRRCREK QRKESARLQT VNRKLSAMNK LLMEENDRLQ KQVSHLVYEN  120
GFMKHRIHTA SGTTTDNSCE SVVVSGQQRQ QQNPTHQHPQ RDANNPAGLL SIAEETLAEF  180
LCKATGTAVD WVQMIGMKPG PDSIGIVAVS RNCSGIAARA CGLVSLEPMK VVEILKDRPS  240
WFRDCRCVET LSVIPTGNGG TIELVNTQIY APTTLAAARD FWTLRYSTSL EDGSYVVCEK  300
SLTSATGGPN GPLSSSFVRA KMLSSGFLIR PCDGGGSIIH IVDHVDLDVS SVPEVLRPLY  360
ESSKILAQKM TVAALRHVRQ IAQETSGEVQ YSGGRQPAVL RTFSQRLCRG FNDAVNGFAD  420
DGWSPMSSDG GEDITIMINS SSAKFAGSQY GNSFLPSFGS GVLCAKASML LQNVPPLVLI  480
RFLREHRAEW ADYGVDAYSA ASLRATPFAV PCVRTGGFPS NQVILPLAQT LEHEEFLEVV  540
RLGGHAYSPE DMGLSRDMYL LQLCSGVDEN VVGGCAQLVF APIDESFADD APLLPSGFRV  600
IPLEQKTTPS DHVSANRTRD LASSLDGSTK TDSETNSRLV LTIAFQFTFD NHSRDNVATM  660
ARQYVRNVVG SIQRVALAIT PRPGSMQLPT SPEALTLVRW ISRSYSIHTG ANLLGAESQA  720
CDGDTLLKQL WNHADAILCC SLKTNASPVF TFANQAGLDM LETTLVALQD IMLDKTLNDS  780
GRKALCSEFA KIMQQGYANL PAGICVSSMG RPVSYEQATV WKVLDDDESN HCLAFILVNW  840
SFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. Binds to the DNA sequence 5'-GTAAT[GC]ATTAC-3'. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:17900520, ECO:0000269|PubMed:9747806}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00170DAPTransfer from AT1G30490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006792m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532580.0AK353258.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-39-H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415465.20.0homeobox-leucine zipper protein ATHB-9
SwissprotO042920.0ATBH9_ARATH; Homeobox-leucine zipper protein ATHB-9
TrEMBLE4MXL10.0E4MXL1_EUTHA; mRNA, clone: RTFL01-39-H09
STRINGXP_006415465.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42562653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  3. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]