PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10006790m

Common Name

EUTSA_v10006790mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Nin-like

Protein Properties

Length: 846aa MW: 94601.9 Da PI: 5.5091

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10006790m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	4.9e-29	556	606	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Thhalv10006790m 556 DKTITLDVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKV 606 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.188	540	626	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-25	558	606	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-23	735	833	No hit	No description
SMART	SM00666	4.9E-26	745	828	IPR000270	PB1 domain
PROSITE profile	PS51745	27.448	745	828	IPR000270	PB1 domain
Pfam	PF00564	5.2E-19	746	827	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.2E-20	746	825	No hit	No description
CDD	cd06407	1.61E-41	746	826	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 846 aa Download sequence Send to blast
MEDSFLQSEN AVMDTEFMDG LLLDGCWLET TDGSEFLNLP PSTSSDSPFD PSSLMWSPTQ 60 DTSALCTSGI VYGRDSAERS SLDEFQWNKR WWIGPGGGGS SVTERLVQAV EHIKDYTTER 120 GSLIQLWVPV NRGGKRVLTT KEQPFSHDPM CQRLANYREI SVNYHFSAEQ DDSKALAGLP 180 GRVFLGKLPE WTPDVRFFRS EEYPRVQHAQ DCDVRGTLAI PVFEQGSKIC LGVIEVVMTT 240 EMVKLRPELE SICRALQAVD LRSTELPIPP SLKGCDLSYK AALPEIRNLL RCACETHKLP 300 LAQTWVSCLQ QSKSGCRHND ENYTHCVSTI DDACYVGDPT VREFHEACSE HHLLKGQGVA 360 GQAFLTNGPC FSSDISNYKK SEYPLSHHAN MFGLHGSVAI RLRCIHTGSA DFVLEFFLPK 420 DCDDLEEQRK MLNALSTIMA HVPRSLRTVT DKELEEESEV IEREETVTPK IENTSELHHL 480 HGNSSWSASF DEIQQSNNSN NPQNLGLVFD GGEKPNDGFG LKRGFDYTRD SNVNESSTFS 540 TDGFSRMTEK KRTKADKTIT LDVLRQYFAG SLKDAAKNIG VCPTTLKRIC RQHGIQRWPS 600 RKIKKVGHSL QKIQRVIDSV EGVSGPLQIG SFYANFPNLA SQSQEPSQQA KTSPPPQPPL 660 QPAKSPVSPY SHSSNSSQCC SSETQLNSGA TTDPSQADVG GAMKKRSSEI DLQSSSLDET 720 VLTLSTLENI PQGTHMLSSS QDDDFLRIKV SYGEENIRFR MRNSHRLTDL LWEIGKRFSI 780 EDMSRYDLKY LDEDNEWVLL TCDEDVDECV DVCRTTPSHT IKLLLHVSSH HFPERSSATG 840 YSLWH*

Sequence ? help Back to Top

Protein Sequence Length: 846 aa Download sequence Send to blast

MEDSFLQSEN AVMDTEFMDG LLLDGCWLET TDGSEFLNLP PSTSSDSPFD PSSLMWSPTQ  60
DTSALCTSGI VYGRDSAERS SLDEFQWNKR WWIGPGGGGS SVTERLVQAV EHIKDYTTER  120
GSLIQLWVPV NRGGKRVLTT KEQPFSHDPM CQRLANYREI SVNYHFSAEQ DDSKALAGLP  180
GRVFLGKLPE WTPDVRFFRS EEYPRVQHAQ DCDVRGTLAI PVFEQGSKIC LGVIEVVMTT  240
EMVKLRPELE SICRALQAVD LRSTELPIPP SLKGCDLSYK AALPEIRNLL RCACETHKLP  300
LAQTWVSCLQ QSKSGCRHND ENYTHCVSTI DDACYVGDPT VREFHEACSE HHLLKGQGVA  360
GQAFLTNGPC FSSDISNYKK SEYPLSHHAN MFGLHGSVAI RLRCIHTGSA DFVLEFFLPK  420
DCDDLEEQRK MLNALSTIMA HVPRSLRTVT DKELEEESEV IEREETVTPK IENTSELHHL  480
HGNSSWSASF DEIQQSNNSN NPQNLGLVFD GGEKPNDGFG LKRGFDYTRD SNVNESSTFS  540
TDGFSRMTEK KRTKADKTIT LDVLRQYFAG SLKDAAKNIG VCPTTLKRIC RQHGIQRWPS  600
RKIKKVGHSL QKIQRVIDSV EGVSGPLQIG SFYANFPNLA SQSQEPSQQA KTSPPPQPPL  660
QPAKSPVSPY SHSSNSSQCC SSETQLNSGA TTDPSQADVG GAMKKRSSEI DLQSSSLDET  720
VLTLSTLENI PQGTHMLSSS QDDDFLRIKV SYGEENIRFR MRNSHRLTDL LWEIGKRFSI  780
EDMSRYDLKY LDEDNEWVLL TCDEDVDECV DVCRTTPSHT IKLLLHVSSH HFPERSSATG  840
YSLWH*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10006790m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY091015	0.0	AY091015.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
GenBank	AY117237	0.0	AY117237.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006416377.1	0.0	protein NLP4
Refseq	XP_024008321.1	0.0	protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	V4KAM4	0.0	V4KAM4_EUTSA; Uncharacterized protein
STRING	XP_006416377.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Thhalv10006790m
Entrez Gene	18992867