PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006708m
Common NameEUTSA_v10006708mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NF-X1
Protein Properties Length: 958aa    MW: 104534 Da    PI: 7.7267
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006708mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.68.5e-06167184118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      C +H+C++ CH GpC+pC
  Thhalv10006708m 167 CARHRCERACHVGPCDPC 184
                      669*************** PP
2zf-NF-X118.35e-06231248118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H C++ CH+GpC+ C
  Thhalv10006708m 231 CGNHFCSEVCHPGPCGDC 248
                      ****************99 PP
3zf-NF-X126.11.8e-08290307118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG H+C++ CH G+CppC
  Thhalv10006708m 290 CGLHTCNEVCHAGDCPPC 307
                      ****************** PP
4zf-NF-X118.83.5e-06388406119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H+C++lCH G CppC 
  Thhalv10006708m 388 CGQHSCESLCHSGHCPPCL 406
                      ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060087.51E-589150No hitNo description
SMARTSM004380.023112130IPR000967Zinc finger, NF-X1-type
PfamPF014227.1114129IPR000967Zinc finger, NF-X1-type
CDDcd060082.76E-11157205No hitNo description
SMARTSM004380.064167186IPR000967Zinc finger, NF-X1-type
PfamPF014224.1E-4167184IPR000967Zinc finger, NF-X1-type
CDDcd060086.92E-8225266No hitNo description
SMARTSM004382.6E-5231250IPR000967Zinc finger, NF-X1-type
PfamPF014226.0E-5231248IPR000967Zinc finger, NF-X1-type
CDDcd060083.28E-13280327No hitNo description
SMARTSM004383.8E-6290309IPR000967Zinc finger, NF-X1-type
PfamPF014226.4E-7290307IPR000967Zinc finger, NF-X1-type
CDDcd060082.18E-4339399No hitNo description
SMARTSM00438170349384IPR000967Zinc finger, NF-X1-type
PfamPF0142216349360IPR000967Zinc finger, NF-X1-type
CDDcd060084.31E-9378430No hitNo description
SMARTSM004382.0E-4388407IPR000967Zinc finger, NF-X1-type
PfamPF014228.4E-5388405IPR000967Zinc finger, NF-X1-type
CDDcd060081.02E-4435482No hitNo description
SMARTSM004380.079445463IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0057498528IPR000967Zinc finger, NF-X1-type
PfamPF014220.0037498513IPR000967Zinc finger, NF-X1-type
CDDcd060081.70E-4526575No hitNo description
PfamPF0142225530556IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018537558IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 958 aa     Download sequence    Send to blast
MICYDKVGRS ANIWSCSSCF SIFHMHCIKK WARAPTSIDL LAEKNQGDNW RCPGCQSVQL  60
TSSNEICYRC FCGKRKDPPS DPYLTPHSCG EPCGKPLEKE FAAAETTKED LCPHVCVLQC  120
HPGPCPPCKA FAPPRGCPCG KKMITTRCSE RRSVLVCGQP CDKLLNCARH RCERACHVGP  180
CDPCHVLVNA TCFCKKKVET VICGDMNLKG ELKAEDGVYS CSFNCGKPLG CGNHFCSEVC  240
HPGPCGDCDL LPSRVKTCYC GKTRLEEQIR RSCLDPIPSC SNMCRKLLPC GLHTCNEVCH  300
AGDCPPCLVQ VNQKCRCGST SRTVECYVTT SLKTDEFVCA KPCGRKKNCG RHRCSERCCP  360
HLNAKKNDLS GDWDPHVCQL PCEKKLRCGQ HSCESLCHSG HCPPCLEMIF TDLTCACGRT  420
SIPPPLPCGT PVPSCQLTCS IPQPCGHSAT HGCHFGDCPP CSAPVEKKCV GDHVVLRNIP  480
CGLKDIRCNK VCGKTRRCGM HACARTCHSE PCDSYNESEA GLRATCGQTC GAPRRDCRHT  540
CAALCHPSEP CPDSRCEFPV TITCSCGRIT STVPCDAGGK SAYDLRVDSI YEASVLQKLP  600
TPLQPVEPSE NRIPLGQRKL SCDDECAKLE RKRVLQDAFD ITPPNLDSLH FSENSAMTEI  660
ISDIYRRDPK WVLAVEERFK FLVLGKARGN TSALKLHVFC PMQKEKRDTV RLLAERWKLA  720
VSNAGWEPKR FTVVHVTSKS KPPTRIIGAR AGAVSVGGPH PPSYDPLVDM DPGLVVSLLD  780
LPREANISAL VLRFGGECEL VWLNDKNALA VFHDHARAAT AMRRLDHGSV YHGAVVIQNS  840
TSPSLSNAWG KLPSSSSGNP WKKAVIQESD ESWGAEDSPI GGSSTDIKAS AWRSATSNTP  900
IATSVNRWSV LEPEKPNTSA LEPLTQIEES SSSKAACKQP VEGSSEEVVD DWEEVCD*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006708m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054890.0AC005489.1 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417489.20.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLV4L0K70.0V4L0K7_EUTSA; Uncharacterized protein
STRINGXP_006417489.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1