PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006543m
Common NameEUTSA_v10006543mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HB-other
Protein Properties Length: 1716aa    MW: 192960 Da    PI: 5.1072
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006543mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.8e-194196257
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      kR+  t+ qle+Le++++++ yps+++r+eL++kl+L++rq ++WF+ rR k+kk
  Thhalv10006543m 41 PKRQMKTPFQLETLEKVYAEETYPSEATRAELSEKLDLSDRQLQMWFCHRRLKDKK 96
                     69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-181996IPR009057Homeodomain-like
SuperFamilySSF466895.13E-163196IPR009057Homeodomain-like
PROSITE profilePS5007116.1963797IPR001356Homeobox domain
SMARTSM003891.9E-1839101IPR001356Homeobox domain
PfamPF000461.3E-164196IPR001356Homeobox domain
CDDcd000862.29E-144296No hitNo description
PROSITE profilePS5082717.628550609IPR018501DDT domain
SMARTSM005711.1E-23550609IPR018501DDT domain
PfamPF027912.7E-17551606IPR018501DDT domain
PfamPF050669.1E-16732799IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156122.4E-6938977IPR028942WHIM1 domain
PfamPF156132.6E-1311071179IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1716 aa     Download sequence    Send to blast
MDMGSDGEDQ IRIVPDASNK KKKKIDNSNS NSNSKDALAK PKRQMKTPFQ LETLEKVYAE  60
ETYPSEATRA ELSEKLDLSD RQLQMWFCHR RLKDKKDGQT KKPAKPVQPA AAAAAALSSV  120
NELPAAGSVP EPDSRSGSGS GSGCSPYSES RRNFASGSSS SRAELDEYEK MGNASYEPRL  180
SMMVRRAIVC IEAQLGEPLR DDGPILGMEF DPLPPGAFGT PIAMQKHQVH PYESKMYEPH  240
DARPRRSQAA ARAFHEQQSL DDPSSFTPEM YGRYSESHAR GVDYEVARSK SSFMHGNGPL  300
PRSYGSHGNA SRNCSTSQQD MSSPIVPSPH GDSFLMERDS VVRTEDPYLL SDGVRKSNDV  360
HRKGKINDGR IGRGSETREN RGQKDLEKLE IQRKKNEERM KKEMERHERE RRKEEERLMR  420
ERIKEEERSQ REQRREMERR EKFLQREFER AEKKKQKEEI RREKDAIRRK IAIEKATARR  480
IAKESMDLIE DEQLELMELA AASKGLPSVL QLDHDTLQNL ELYKDSLSTF PPKALQLKMP  540
FTISPWKDSE ENVGNLLMVW RFLISFSDVL DLWPFTLDEF IQAFHDYDSR LLGEIHVTLL  600
RSIIRDVEDV ARTPFSGIGN NQYTTANPEG GHPQIVEGAY AWGFDIRSWK KHLNPLTWPE  660
VLRQLALSAG LGPRLKKKNS RLTHTSDKEE AKGCEDIIST IRSGSAAESA FALMREKGLL  720
APRKSRHRLT PGTVKFAAFH VLSLEGSKGL TVLELADKIQ KSGLRDLTTS KTPEASISVA  780
LTRDVKLFER IAPSTYCVRA PYVKDPADGE AILADARKKI RAFENGFTGA EDVNDLERDE  840
DFECDIDEDP EVDDLAILAS ASKSADLGEA SSLSGKGGDT MFCDVTPDIK SEVEKRFSSL  900
PPSSVKSTVP QCHSEQRKDT AICCVDNKNA VVEDSNQGQS WIQGLTEGDY CHLSVEERLD  960
ALVALVGIAN EGNSIRSGLE DRMEAANSLK KQMWAEAQLD NSSMRDVLQN LSSSKTESTM  1020
GLQIIQSSTR ERDCFDRNPS QHIDETKPLE VVSNDLHKSS TERAFVNQEA NISQENCSSQ  1080
HGYASKRSRS QLKSYIGHKA EEVYPYRSLP LGQDRRHNRY WHFAASASKS DPCSGLLFVE  1140
LHDGKWRLID SEEAFDTLVA SLDMRGIRES HLRIMLQKIE GSFKENTCKN LKLSRNPLLE  1200
EKSVVNRSPR DSVSPSSAIS GSNSDSMATS TSIRVELGRN DTEKEKLSKR FHDFQRWMWS  1260
ETYSSLPSCA RKHGKKRCEL LATCEVCVAS YLSEYTHCTS CHQRLDMVDS SERKILDSGL  1320
TASPLPFGVR LLKALLVFLE ASIPDEALES FWTEDKRKMW GFRLNASSSP EELLQVLTSL  1380
ESAIKKESLS SNFLSAKELL GAADADDPAS VGIFPWIPKT VSAVALRISE LDASIFYVKP  1440
EKPELIPEDE NEQISLLPGI SLFKGKGPKE QEDQEEVVPN SGKRSNKRGR VTFGSGSNRK  1500
VKRKKAQGGL NRLVAGRSNV AVDRNLTSVE LNHQVPGRGK RTVRKRPERN DEDNYRLVSR  1560
MADIVRPKSE EVEEEDEEEE EEEQTFRDID EDWAGETPRE MDEDWASGTP NRMMTPMQVD  1620
DESDNSVGVE SEDEDDDGDG QFVDYSQRNK WGLDWNSNPN EAMEEEEEEV GGVERVEGED  1680
VAEMSESSED DDDVPANNAE NNYNRESEDY SSSDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18996RRLKDKKD
214971504NRKVKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006543m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0101550.0AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415655.10.0homeobox-DDT domain protein RLT1 isoform X1
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLV4L2Q30.0V4L2Q3_EUTSA; Uncharacterized protein
STRINGXP_006415655.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83472236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1