PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006458m
Common NameEUTSA_v10006458mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 281aa    MW: 32171.7 Da    PI: 6.7548
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006458mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.2e-32112170159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+v++s+fpr+YYrCt++ C vkk+vers +dp+ v++tYeg+H+h+
  Thhalv10006458m 112 LDDGYKWRKYGQKPVRNSPFPRNYYRCTTSWCDVKKRVERSFSDPSNVITTYEGQHTHP 170
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-3299172IPR003657WRKY domain
SuperFamilySSF1182905.49E-28105172IPR003657WRKY domain
PROSITE profilePS5081131.307107172IPR003657WRKY domain
SMARTSM007744.7E-37112171IPR003657WRKY domain
PfamPF031061.2E-24113170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MENIGVGVGV PFSDLTVERY PLGFMDLLGL HQSISRYALI HPPSMQLPAT PSSISSTSCE  60
ALSEDENSRD YEEEEEQHTR YKPFKLAKSR SEQKKTRVPR VSFITKSEVN NLDDGYKWRK  120
YGQKPVRNSP FPRNYYRCTT SWCDVKKRVE RSFSDPSNVI TTYEGQHTHP IPHIMSKRVS  180
FGSNGSASGA HFGLPKLPPQ LHHQLFDYNN HQQQQQELSF FGTEYLNRQE KGSDHDDEDD  240
DHDYVMKKSR TQDLLNGAGL VRDHGLLQDV VPAHIIKEEY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-261051721077Probable WRKY transcription factor 4
2lex_A7e-261051721077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006458m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402383.10.0probable WRKY transcription factor 68
SwissprotQ93WV61e-103WRK68_ARATH; WRKY transcription factor 68
TrEMBLV4NCW10.0V4NCW1_EUTSA; Uncharacterized protein
STRINGXP_006402383.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150681619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62340.15e-98WRKY family protein