PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10006157m | ||||||||
Common Name | EUTSA_v10006157mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | WRKY | ||||||||
Protein Properties | Length: 275aa MW: 30550.5 Da PI: 4.8801 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93 | 2.2e-29 | 70 | 128 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + itY +Hnh+ Thhalv10006157m 70 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPSKLMITYACDHNHP 128 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-30 | 61 | 130 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.502 | 64 | 130 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-25 | 65 | 130 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.4E-34 | 69 | 129 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-24 | 71 | 128 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MHRRGIQESD DEEDETYNDV VPESPSSCED SKISKPTPKK SRRNVEKRVV SVPIADVEGS 60 KSRGEVYPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CPARKQVERS RVDPSKLMIT 120 YACDHNHPFP SSSGNNKSHH HRTSTVVLKT AKKEENHEEE DEEEEVTVAA EEPVGLDLSH 180 VDSPLLLGGC YSEIAGEFGW FYDASISSSS CSGNFLDVTL ERGFSVGEEE DESLFSDLGD 240 LPDCASVFRR GTVATEEQHR RCDFGAIPFC DSSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-20 | 47 | 131 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-20 | 47 | 131 | 6 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10006157m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352570 | 0.0 | AK352570.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-A23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402757.1 | 0.0 | probable WRKY transcription factor 69 isoform X1 | ||||
Swissprot | Q93WV5 | 1e-168 | WRK69_ARATH; Probable WRKY transcription factor 69 | ||||
TrEMBL | V4L1Q1 | 0.0 | V4L1Q1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006402757.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12478 | 19 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.1 | 1e-169 | WRKY DNA-binding protein 69 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10006157m |
Entrez Gene | 18020248 |
Publications ? help Back to Top | |||
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