PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006118m
Common NameEUTSA_v10006118mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 307aa    MW: 34645.2 Da    PI: 4.572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006118mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.7e-17100150256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y+GVr+++ +g+++AeIrdps+     r++lg+f taeeAa  +++a+  ++g+
  Thhalv10006118m 100 KYRGVRQRP-WGKFAAEIRDPSK---GSRVWLGTFLTAEEAALVYDRAAIDIKGH 150
                      8********.**********965...4**********************988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-2999156IPR001471AP2/ERF domain
PfamPF008472.8E-10100150IPR001471AP2/ERF domain
PROSITE profilePS5103221.483100157IPR001471AP2/ERF domain
CDDcd000184.55E-30100156No hitNo description
SMARTSM003803.0E-35100163IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-19100157IPR016177DNA-binding domain
PRINTSPR003678.1E-10101112IPR001471AP2/ERF domain
PRINTSPR003678.1E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MERRNRRVKF TEHRTVTSVP AKPSNGSPRV VRITYTDPFA TDSSSDDDDV TVAPRVKRFV  60
EEIRFGEAQS SSAVRKNRYK VEKGGGARND DVSASANPRK YRGVRQRPWG KFAAEIRDPS  120
KGSRVWLGTF LTAEEAALVY DRAAIDIKGH NAQTNFLTPP PPPDKKPVID LTTVSSCDSG  180
KDSRQSLHSP TSVLRFNVNE EAEYRTELEN EPIELSPETK STVVEESKES LFPDSYSLPD  240
LCLAGEYFWD CEIAPDPLFL DEIEIHQPFS NMEIPKEEND PEDFSFNLNE DFDSSLWDVN  300
NFFEPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2296156162ATERF1
3gcc_A5e-2296156162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006118m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402462.20.0ethylene-responsive transcription factor CRF6
SwissprotQ9M3741e-126CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLV4L0W20.0V4L0W2_EUTSA; Uncharacterized protein
STRINGXP_006402462.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-123cytokinin response factor 6