PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10006105m
Common NameEUTSA_v10006105mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Trihelix
Protein Properties Length: 318aa    MW: 35543.9 Da    PI: 9.6343
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10006105mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.21.1e-1326126186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrt..sessstc 79 
                      +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++             ++ +  r+ +qCk++++ l+k+yk +k++ ++ +  +   s +
  Thhalv10006105m  26 CWSEEATFTLIQAWGSRYVDLSRGNLRQKHWQEVANAVndrhfntgrnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSESNpgAAYISPW 119
                      7************************************************997777789*****************9999888775224556899 PP

         trihelix  80 pyfdqle 86 
                      p+f+ l+
  Thhalv10006105m 120 PFFSALD 126
                      9*99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2424128No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MIDAGNDSFS PGSSRPSPST LSREDCWSEE ATFTLIQAWG SRYVDLSRGN LRQKHWQEVA  60
NAVNDRHFNT GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VEKARVSESN PGAAYISPWP  120
FFSALDELLR ESFPTSSTPD STDNQRLSLP MSIIPIPVAP RSAIPRRPAP APAIMPPGGD  180
NLLGFRGNLN AFAAAAAAAA CPAYEDDSDG SRSRSSGGNR KREREIERNQ GYKEVADAIE  240
RLGQIYERVE ERKRKEMVEL EKQRMRFAKE LECHRMQLFT EMQVRLHKLR RTSGSKGPTS  300
SASAALDYGM MDFPSYF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10006105m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532440.0AK353244.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-O01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402765.10.0trihelix transcription factor ASIL2
TrEMBLE4MXJ70.0E4MXJ7_EUTHA; mRNA, clone: RTFL01-27-O01
TrEMBLV4LWF40.0V4LWF4_EUTSA; Uncharacterized protein
STRINGXP_006402765.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-137sequence-specific DNA binding transcription factors