PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10006092m

Common Name

EUTSA_v10006092mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

Dof

Protein Properties

Length: 331aa MW: 36491.3 Da PI: 9.306

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10006092m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	9.8e-39	73	133	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss Thhalv10006092m 73 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 133 6899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	72	131	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.7E-33	75	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	77	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MDATKWTQGF QEMINVKPIE QMISDTTNNT SQQQQQTFIA TTTRPNATAS NGGSGAGNNN 60 NTATTMESRK ARPQEKVNCP RCNSTNTKFC YYNNYSLTQP RYFCKGCRRY WTEGGSLRNV 120 PVGGSSRKNK RSSTHLASPS NPKLPDLNPP ILFSSQIPNK SSKDLNLLSF PVMQDHHHHH 180 GMSQFIHMPK IENNNTSSSI YASLSPVSAL ELLRSNGISS RGMNTFLPGQ MMDSNSVLYS 240 SLGFPAMADY KQSNNNLSFS IDHHQGIGHN TINSNQSADD SNHADGMNGA SRVLFPFSDM 300 KELSSTTQEK SHGNNTYWSG MFSNTGGYSW *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10006092m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN979481	0.0	JN979481.1 Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006402435.1	0.0	dof zinc finger protein DOF3.7 isoform X1
Swissprot	Q43385	0.0	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	V4LVF4	0.0	V4LVF4_EUTSA; Uncharacterized protein
STRING	XP_006402435.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	0.0	Dof family protein

Link Out ? help Back to Top
Phytozome	Thhalv10006092m
Entrez Gene	18020312