PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10006058m | ||||||||
Common Name | EUTSA_v10006058mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | SBP | ||||||||
Protein Properties | Length: 359aa MW: 40240 Da PI: 9.7522 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.5 | 2.6e-40 | 63 | 140 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++dls++k+y++rhkvC +hsk+++v+v+gl+qrfCqqCsrfh+lsefD ekrsCrrrLa hnerrrk+qa Thhalv10006058m 63 RCQVEGCKMDLSNVKTYYSRHKVCCIHSKSSKVIVDGLHQRFCQQCSRFHQLSEFDSEKRSCRRRLACHNERRRKPQA 140 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.8E-31 | 60 | 125 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.188 | 61 | 138 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.31E-37 | 62 | 142 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-29 | 64 | 137 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MELLMDSGKN RTRSGGSSST ESSSSLSGGL RFGQKIYFED GSGSGAGSSK NRVKAVRKSL 60 TARCQVEGCK MDLSNVKTYY SRHKVCCIHS KSSKVIVDGL HQRFCQQCSR FHQLSEFDSE 120 KRSCRRRLAC HNERRRKPQA TTTLLTSRCS RLAPSLYGNA NAAMIRSVLG DPTTWTTARS 180 VMRRSAPWQI YPERENHQVM NVFAHGSSSF TTTTRSEMVN NISTDSNCAL SLLSNSNTIP 240 QQQQQQLQTS TNIWRPASGF ESTIADRVTM AQPPPVIIQH QYLNQTWEIM AGEKSNSQDM 300 SPVLGLRQIS EQDDFHRNNG TTMGGFESSL HQQVLRQYME PENTRAYDSS PQHFNWSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-28 | 64 | 137 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00412 | DAP | Transfer from AT3G57920 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10006058m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402825.1 | 0.0 | squamosa promoter-binding-like protein 15 | ||||
Swissprot | Q9M2Q6 | 1e-180 | SPL15_ARATH; Squamosa promoter-binding-like protein 15 | ||||
TrEMBL | V4LWK6 | 0.0 | V4LWK6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006402825.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2144 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57920.1 | 1e-164 | squamosa promoter binding protein-like 15 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10006058m |
Entrez Gene | 18019804 |
Publications ? help Back to Top | |||
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