PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005857m
Common NameEUTSA_v10005857mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ARF
Protein Properties Length: 585aa    MW: 65660.6 Da    PI: 6.1219
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005857mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.4e-23123223198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv++++L +gD +vF   + 
  Thhalv10005857m 123 FVKILTASDTSTHGGFSVLRKHATEClpaldmtQ--ATPTQDLVTRDLHGVEWRFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDAFVFL--RG 212
                      89****************************9543..444568************************************************..34 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                      +++ l+v+v+r
  Thhalv10005857m 213 ENGDLRVGVRR 223
                      88889***998 PP

2Auxin_resp97.12.6e-32249328183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t++ F v+Y+Pr   s+F+v v+k+++a+k+ +s+G+Rf+m+fe+e+s+er ++Gt+vg+ dl++ +Wp SkWrsL+
  Thhalv10005857m 249 ASHAVRTQTLFVVFYKPRI--SQFIVGVNKYMEAMKHGFSLGTRFRMRFEGEESPERIFTGTIVGTGDLSS-QWPASKWRSLQ 328
                      689***************8..9**********************************************777.*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-39111252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-38117238IPR015300DNA-binding pseudobarrel domain
CDDcd100175.06E-20121223No hitNo description
PROSITE profilePS5086312.069123225IPR003340B3 DNA binding domain
PfamPF023623.7E-21123223IPR003340B3 DNA binding domain
SMARTSM010192.9E-20123225IPR003340B3 DNA binding domain
PfamPF065078.6E-30249328IPR010525Auxin response factor
PfamPF023095.7E-14468565IPR033389AUX/IAA domain
SuperFamilySSF542771.83E-12476556No hitNo description
PROSITE profilePS5174525.619480572IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MANVDGDDFR NSSPRSYQDQ LYTELWKACA GPLVEVPLAE ERVFYFPQGH MEQLVASTNQ  60
GIESEEIPDF NLPPKILCRV LSVMLKAEHE TDEVYAQITL QPEVDQSEPT PLVEPTKQMF  120
HSFVKILTAS DTSTHGGFSV LRKHATECLP ALDMTQATPT QDLVTRDLHG VEWRFKHIFR  180
GQPRRHLLTT GWSTFVSSKR LVAGDAFVFL RGENGDLRVG VRRLARHQST MPTSVISSQS  240
MHLGVLATAS HAVRTQTLFV VFYKPRISQF IVGVNKYMEA MKHGFSLGTR FRMRFEGEES  300
PERIFTGTIV GTGDLSSQWP ASKWRSLQVQ WDEPTTVQRP DKVSPWEIEP FLPTSPVSTP  360
AQPKCKRSRP IESSVLTPAP ANLLYSFPQS QDPTNASLKL FQDPSTERNP GGFAINNSFK  420
ADTPTPASCC YRLFGFDLAS SPPALIPPEK QSLDTSAVAK CQEPITPNAS NEQKKQQTSR  480
TRTKVQMQGI AVGRAVDLTL LKSYDELIKE LEEMFEIQGQ LLSRDKWIVV FTDDEGDMML  540
AGDDPWNEFC KMAKKIFIYS SDEVKKMTTK MKISSSLEDE ESMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1611935117355Auxin response factor 1
4ldw_A1e-1611935117355Auxin response factor 1
4ldw_B1e-1611935117355Auxin response factor 1
4ldx_A1e-1611935117355Auxin response factor 1
4ldx_B1e-1611935117355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005857m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3347170.0AF334717.1 Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA, complete cds.
GenBankAY0597460.0AY059746.1 Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA, complete cds.
GenBankAY0704630.0AY070463.1 Arabidopsis thaliana AT3g61830/F15G16_220 mRNA, complete cds.
GenBankAY0913920.0AY091392.1 Arabidopsis thaliana putative auxin response factor protein (At3g61830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402437.10.0auxin response factor 18
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLV4L0T80.0V4L0T8_EUTSA; Auxin response factor
STRINGXP_006402437.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74351841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]