PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10005857m | ||||||||
Common Name | EUTSA_v10005857mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ARF | ||||||||
Protein Properties | Length: 585aa MW: 65660.6 Da PI: 6.1219 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.1 | 3.4e-23 | 123 | 223 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv++++L +gD +vF + Thhalv10005857m 123 FVKILTASDTSTHGGFSVLRKHATEClpaldmtQ--ATPTQDLVTRDLHGVEWRFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDAFVFL--RG 212 89****************************9543..444568************************************************..34 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +++ l+v+v+r Thhalv10005857m 213 ENGDLRVGVRR 223 88889***998 PP | |||||||
2 | Auxin_resp | 97.1 | 2.6e-32 | 249 | 328 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr s+F+v v+k+++a+k+ +s+G+Rf+m+fe+e+s+er ++Gt+vg+ dl++ +Wp SkWrsL+ Thhalv10005857m 249 ASHAVRTQTLFVVFYKPRI--SQFIVGVNKYMEAMKHGFSLGTRFRMRFEGEESPERIFTGTIVGTGDLSS-QWPASKWRSLQ 328 689***************8..9**********************************************777.*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.88E-39 | 111 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-38 | 117 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.06E-20 | 121 | 223 | No hit | No description |
PROSITE profile | PS50863 | 12.069 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-21 | 123 | 223 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-20 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.6E-30 | 249 | 328 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.7E-14 | 468 | 565 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.83E-12 | 476 | 556 | No hit | No description |
PROSITE profile | PS51745 | 25.619 | 480 | 572 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MANVDGDDFR NSSPRSYQDQ LYTELWKACA GPLVEVPLAE ERVFYFPQGH MEQLVASTNQ 60 GIESEEIPDF NLPPKILCRV LSVMLKAEHE TDEVYAQITL QPEVDQSEPT PLVEPTKQMF 120 HSFVKILTAS DTSTHGGFSV LRKHATECLP ALDMTQATPT QDLVTRDLHG VEWRFKHIFR 180 GQPRRHLLTT GWSTFVSSKR LVAGDAFVFL RGENGDLRVG VRRLARHQST MPTSVISSQS 240 MHLGVLATAS HAVRTQTLFV VFYKPRISQF IVGVNKYMEA MKHGFSLGTR FRMRFEGEES 300 PERIFTGTIV GTGDLSSQWP ASKWRSLQVQ WDEPTTVQRP DKVSPWEIEP FLPTSPVSTP 360 AQPKCKRSRP IESSVLTPAP ANLLYSFPQS QDPTNASLKL FQDPSTERNP GGFAINNSFK 420 ADTPTPASCC YRLFGFDLAS SPPALIPPEK QSLDTSAVAK CQEPITPNAS NEQKKQQTSR 480 TRTKVQMQGI AVGRAVDLTL LKSYDELIKE LEEMFEIQGQ LLSRDKWIVV FTDDEGDMML 540 AGDDPWNEFC KMAKKIFIYS SDEVKKMTTK MKISSSLEDE ESMD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-161 | 19 | 351 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-161 | 19 | 351 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-161 | 19 | 351 | 17 | 355 | Auxin response factor 1 |
4ldx_A | 1e-161 | 19 | 351 | 17 | 355 | Auxin response factor 1 |
4ldx_B | 1e-161 | 19 | 351 | 17 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10005857m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF334717 | 0.0 | AF334717.1 Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA, complete cds. | |||
GenBank | AY059746 | 0.0 | AY059746.1 Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA, complete cds. | |||
GenBank | AY070463 | 0.0 | AY070463.1 Arabidopsis thaliana AT3g61830/F15G16_220 mRNA, complete cds. | |||
GenBank | AY091392 | 0.0 | AY091392.1 Arabidopsis thaliana putative auxin response factor protein (At3g61830) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006402437.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | V4L0T8 | 0.0 | V4L0T8_EUTSA; Auxin response factor | ||||
STRING | XP_006402437.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7435 | 18 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61830.1 | 0.0 | auxin response factor 18 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10005857m |
Entrez Gene | 18020314 |
Publications ? help Back to Top | |||
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