PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10005786m

Common Name

EUTSA_v10005786mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

HD-ZIP

Protein Properties

Length: 818aa MW: 89447.5 Da PI: 7.0412

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10005786m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.2	7.8e-20	124	179	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++ Le++F+++ +p++++r +L+++l+L+ rqVk+WFqNrR+++k Thhalv10005786m 124 KKRYHRHTPKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMK 179 688999***********************************************999 PP
2	START	179.7	1.7e-56	334	554	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 ela++a++elvk+ + +ep+Wv+s e +n++e+ ++f++ v + +ea++++g v+ ++ lve+l+d+ +W e+++ + + Thhalv10005786m 334 ELALAAMDELVKMSQRREPLWVRSLetgfETLNKEEYDTSFSRC-VgpkqdgFVSEASKETGTVIINSLALVETLMDSE-RWAEMFPcmisRTS 425 5899*******************8888666666666666443.14777889**********************.********** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167 t+e issg gal+lm aelq+lsplvp R + f+R+++q+ +g+w++vdvS+ds k + sss+ R lpSg+l+++++ng+skvtw+ Thhalv10005786m 426 TTEIISSGmggtrnGALHLMHAELQLLSPLVPvRQVSFLRFCKQHAEGVWAVVDVSIDSIVKGS-SSSCRR---LPSGCLVQDMANGYSKVTWI 515 **********************************************************98.677766...**************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 eh++++++ +h l+r+l++ gla+ga++w+a+lqrqce+ Thhalv10005786m 516 EHTEYDENRIHRLYRPLLSCGLAFGAQRWMAALQRQCEC 554 ***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.13E-19	111	181	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.7E-21	114	181	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.443	121	181	IPR001356	Homeobox domain
SMART	SM00389	1.9E-18	122	185	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-17	124	179	IPR001356	Homeobox domain
CDD	cd00086	1.84E-16	128	181	No hit	No description
PROSITE pattern	PS00027	0	156	179	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	39.452	325	557	IPR002913	START domain
SuperFamily	SSF55961	3.3E-30	328	554	No hit	No description
CDD	cd08875	1.26E-109	329	553	No hit	No description
SMART	SM00234	1.8E-45	334	554	IPR002913	START domain
Pfam	PF01852	2.4E-48	334	554	IPR002913	START domain
SuperFamily	SSF55961	7.0E-18	583	809	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MSLNGFLGDG SSGDRAAAKL ISDVPYSDHF PFSAAATMFG TSIAPSHHSL IPHSRPFSSH 60 GLSLGLQTNG ENNGEISRNG EIFESNVTRK CRGDDAESRS ESDNAEAVSG DDLETDDKPP 120 RKKKKRYHRH TPKQIQDLES VFKECAHPDE KQRLDLSRRL NLDPRQVKFW FQNRRTQMKT 180 QIERHENALL RQENDKLRAE NMSVREAMRN PMCGNCGGPA VLGEISMEEQ HLRIENSRLK 240 DELDRVCALT GKFLGRSIPS TAGSHHIPDS ALVLGVGVGS GGCNGGGFTL SPPSLPQASP 300 RFEISNGTGS CLATVNRQPP VSVSDLDQRS RYLELALAAM DELVKMSQRR EPLWVRSLET 360 GFETLNKEEY DTSFSRCVGP KQDGFVSEAS KETGTVIINS LALVETLMDS ERWAEMFPCM 420 ISRTSTTEII SSGMGGTRNG ALHLMHAELQ LLSPLVPVRQ VSFLRFCKQH AEGVWAVVDV 480 SIDSIVKGSS SSCRRLPSGC LVQDMANGYS KVTWIEHTEY DENRIHRLYR PLLSCGLAFG 540 AQRWMAALQR QCECLTILMS STVSPSRSPT PISCNGRKSM LKLAKRMTDN FCGGVCASSL 600 QKWSKLNVGN VDEDVRIMTR KSVNDPGEPP GIILNAATSV WMPVSPRRLF DFLGNERLRS 660 EWDILSNGGP MQEMAHIAKG HDHSNSVSLL RATAINANQS SMLILQETSI DAAGAIVVYA 720 PVDIPAMQAV MNGGDSAYVA LLPSGFAILP NAPRRCAAEE RNGGCMEEGG SLLTVAFQIL 780 VNSLPTAKLT VESIETVNNL ISCTVQKIKT ALHCDST*

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MSLNGFLGDG SSGDRAAAKL ISDVPYSDHF PFSAAATMFG TSIAPSHHSL IPHSRPFSSH  60
GLSLGLQTNG ENNGEISRNG EIFESNVTRK CRGDDAESRS ESDNAEAVSG DDLETDDKPP  120
RKKKKRYHRH TPKQIQDLES VFKECAHPDE KQRLDLSRRL NLDPRQVKFW FQNRRTQMKT  180
QIERHENALL RQENDKLRAE NMSVREAMRN PMCGNCGGPA VLGEISMEEQ HLRIENSRLK  240
DELDRVCALT GKFLGRSIPS TAGSHHIPDS ALVLGVGVGS GGCNGGGFTL SPPSLPQASP  300
RFEISNGTGS CLATVNRQPP VSVSDLDQRS RYLELALAAM DELVKMSQRR EPLWVRSLET  360
GFETLNKEEY DTSFSRCVGP KQDGFVSEAS KETGTVIINS LALVETLMDS ERWAEMFPCM  420
ISRTSTTEII SSGMGGTRNG ALHLMHAELQ LLSPLVPVRQ VSFLRFCKQH AEGVWAVVDV  480
SIDSIVKGSS SSCRRLPSGC LVQDMANGYS KVTWIEHTEY DENRIHRLYR PLLSCGLAFG  540
AQRWMAALQR QCECLTILMS STVSPSRSPT PISCNGRKSM LKLAKRMTDN FCGGVCASSL  600
QKWSKLNVGN VDEDVRIMTR KSVNDPGEPP GIILNAATSV WMPVSPRRLF DFLGNERLRS  660
EWDILSNGGP MQEMAHIAKG HDHSNSVSLL RATAINANQS SMLILQETSI DAAGAIVVYA  720
PVDIPAMQAV MNGGDSAYVA LLPSGFAILP NAPRRCAAEE RNGGCMEEGG SLLTVAFQIL  780
VNSLPTAKLT VESIETVNNL ISCTVQKIKT ALHCDST*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	125	RKKKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00418	DAP	Transfer from AT3G61150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10005786m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY050866	0.0	AY050866.1 Arabidopsis thaliana putative homeobox protein (At3g61150) mRNA, complete cds.
GenBank	AY096757	0.0	AY096757.1 Arabidopsis thaliana putative homeobox protein (At3g61150) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006402516.1	0.0	homeobox-leucine zipper protein HDG1
Swissprot	Q9M2E8	0.0	HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBL	V4LJP3	0.0	V4LJP3_EUTSA; Uncharacterized protein
STRING	XP_006402516.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1128	27	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	0.0	homeodomain GLABROUS 1

Link Out ? help Back to Top
Phytozome	Thhalv10005786m
Entrez Gene	18019748

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Horstman A, et al. AIL and HDG proteins act antagonistically to control cell proliferation. Development, 2015. 142(3): p. 454-64 [PMID:25564655]