PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005658m
Common NameEUTSA_v10005658mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 275aa    MW: 30315.4 Da    PI: 9.5412
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005658mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-0698120123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C++CgksF r+  L  H+ +H
  Thhalv10005658m  98 YRCKICGKSFERSQALGGHQTLH 120
                      9******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.31E-695122No hitNo description
Gene3DG3DSA:3.30.160.602.0E-598120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.15498125IPR007087Zinc finger, C2H2
PfamPF139122.9E-898122IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787210237IPR007087Zinc finger, C2H2
PfamPF139120.068210234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTEFERREMN EAAMSLVMFS ERVAVLRSLS PGDVSMDLEL EPMQEKIIHC VESKQVSSEV  60
FSHSGFEKSS TCSDVVAQTL PSTPRIKSQI KRESNSSYRC KICGKSFERS QALGGHQTLH  120
RSIKGQLALK KDDFEGGNSL SLLTDSGAKQ VVPKLSCFEE HSVLSKQEFS ELFSHSAFGK  180
SGTGSDVVAQ SLPSLLTSNL QKKRQSNSSY KCKTCSKRFW CSQALGGRKT LHRSKRQLAC  240
KKKDLRVGNS LNDSSEAKKI VSKLSNFEVS EGVD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005658m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024006854.10.0zinc finger protein 568
TrEMBLV4KYQ20.0V4KYQ2_EUTSA; Uncharacterized protein
STRINGXP_006395282.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15545814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.18e-34C2H2 family protein