PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005619m
Common NameEUTSA_v10005619mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 146aa    MW: 16379.3 Da    PI: 6.7686
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005619mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.9e-1493141153
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                      +++kGVr ++ +g+W AeI+dp   +++ + +lg+f t e+A +a+++a  +l
  Thhalv10005619m  93 KKHKGVRKKP-SGKWSAEIWDP---NMKESRWLGTFPTYEMAVQAYEEADAAL 141
                      589****999.7*********9...445999****************997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-894144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1694142IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1294142IPR016177DNA-binding domain
PROSITE profilePS5103216.21294145IPR001471AP2/ERF domain
CDDcd000182.69E-1697145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MDNSESNPSY DQNENFTPAS QPPYLTRDQE HEIIVYALRQ VITSPGGDTS SSNSFAREAL  60
PRPEAGPCPL CGVTGCYGCA FPRHEEEIKK KEKKHKGVRK KPSGKWSAEI WDPNMKESRW  120
LGTFPTYEMA VQAYEEADAA LVRRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188100KKKEKKHKGVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005619m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393900.11e-107putative ethylene-responsive transcription factor ERF121
SwissprotQ9FGC97e-61EF121_ARATH; Putative ethylene-responsive transcription factor ERF121
TrEMBLV4MIL31e-105V4MIL3_EUTSA; Uncharacterized protein
STRINGXP_006393900.11e-106(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.12e-51ERF family protein