PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10005612m
Common NameEUTSA_v10005612mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 226aa    MW: 25942.2 Da    PI: 6.5338
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10005612mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.4e-2069122457
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      ++++t+eq++ Le  Fe+++++   ++e++A +lgL+ rqV vWFqNrRa++k+
  Thhalv10005612m  69 KRKLTDEQVNMLEYSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKN 122
                      4589************************************************95 PP
2HD-ZIP_I/II120.68.3e-3968159293
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      +kr+l++eqv++LE sFe+e+kLe+ rK+++a eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++  +++Le +v +L+e+l+e
  Thhalv10005612m  68 RKRKLTDEQVNMLEYSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKSQHDTVVLGQCHLEVQVLKLTEQLSE 159
                      8***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.1E-1866127IPR001356Homeobox domain
SuperFamilySSF466894.6E-1867125IPR009057Homeodomain-like
PROSITE profilePS5007116.34268123IPR001356Homeobox domain
CDDcd000867.16E-1668124No hitNo description
PfamPF000463.1E-1769122IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-2070130IPR009057Homeodomain-like
PRINTSPR000312.3E-594103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000312.3E-5103119IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDQMVVGSHV YPYTTQTQGS QCIIVNQIDR SLSSGEGPKP VKRRRKRKGK GSSATNEDDV  60
AAIGGMLRKR KLTDEQVNML EYSFENEHKL ESGRKEKIAG ELGLDPRQVA VWFQNRRARW  120
KNKKLEEEYA KLKSQHDTVV LGQCHLEVQV LKLTEQLSEA QNEIRKLSER LEEMSTNSSS  180
SSLSVEANDA PIDFEFAPET NYNIPFYMLD NNYLQSMEYW DRLYV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13743PKPVKRR
24147KRRRKRK
36671LRKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00591DAPTransfer from AT5G66700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10005612m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393863.11e-169homeobox-leucine zipper protein ATHB-53
SwissprotQ9LVR01e-123ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53
TrEMBLV4KIY71e-168V4KIY7_EUTSA; Uncharacterized protein
STRINGXP_006393863.11e-168(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126021731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.11e-122homeobox 53
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]