PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10005566m | ||||||||
Common Name | EUTSA_v10005566mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 28338.9 Da PI: 5.8032 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.5e-20 | 98 | 148 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+++ta eAa+a+++a+ +l+g Thhalv10005566m 98 HYRGVRRRP-WGKYAAEIRDP---NkKGSRIWLGTYDTAVEAARAYDQAAFQLRG 148 8********.**********9...4345*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 97 | 156 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.41E-31 | 97 | 156 | No hit | No description |
PROSITE profile | PS51032 | 24.777 | 98 | 156 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-14 | 98 | 148 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-24 | 98 | 158 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.6E-38 | 98 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 99 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MATEQEVLAI EFISQHLLRD FASMETKVSN FTLQEADPPL FTNQVHHFRS ETSPRTINNQ 60 NPKPNSTLNR RKPPLPNLSV PRTVSCTTKV REEEEEKHYR GVRRRPWGKY AAEIRDPNKK 120 GSRIWLGTYD TAVEAARAYD QAAFQLRGRK AILNFPLDVR AASESYFEEG VIGLGKRKRI 180 KISPAVEEEE KAEAVRVKVE EEESDTTEAE VEAVPLTPSS WMGVWDVGAG DGIFSVPPLT 240 PTSPDFSVIS VT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-28 | 97 | 159 | 4 | 66 | ATERF1 |
3gcc_A | 7e-28 | 97 | 159 | 4 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00572 | DAP | Transfer from AT5G61600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10005566m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006394488.1 | 0.0 | ethylene-responsive transcription factor ERF104 | ||||
Swissprot | Q9FKG1 | 1e-121 | EF104_ARATH; Ethylene-responsive transcription factor ERF104 | ||||
TrEMBL | V4KKN7 | 0.0 | V4KKN7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006394488.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13464 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61600.1 | 1e-116 | ethylene response factor 104 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10005566m |
Entrez Gene | 18012928 |
Publications ? help Back to Top | |||
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