PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10005413m | ||||||||
Common Name | EUTSA_v10005413mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26525.7 Da PI: 8.0635 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.4 | 1.6e-17 | 9 | 48 | 1 | 40 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 kri+nks rqvtfskRrng++ KA LS+LC+ +av+++ Thhalv10005413m 9 KRIDNKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVV 48 79*********************************98753 PP | |||||||
2 | K-box | 26.2 | 3.3e-10 | 151 | 199 | 36 | 84 |
K-box 36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 +l ++++ s+ L ++e+qLe++++ R++K+el++e +++lq+k Thhalv10005413m 151 SNLEEPNVDNVSVDSLISVEDQLETAMSVTRARKTELMMEFVKTLQEKL 199 555556778999**********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.1E-18 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.731 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-21 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-17 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-16 | 10 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-17 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-17 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.219 | 129 | 216 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.9E-6 | 157 | 198 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MGRRKVEIKR IDNKSSRQVT FSKRRNGLIE KARQLSILCE SSIAVLVVFG LRQALQLLLR 60 RQIWFIYPIL RCTSGRFVDR LIGVNGDFDQ DSLVEIWMPH CPLQLLFQNV FMTKIIDRYD 120 IQHADDLKTL ELAEKTRNYL PHKELLELVQ SNLEEPNVDN VSVDSLISVE DQLETAMSVT 180 RARKTELMME FVKTLQEKLG KNTALVTDDE RALSPASNSG NNPPETLSLL K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the negative regulation of flowering time, probably through the photoperiodic and vernalization pathways; more efficient in cv. Landsberg erecta than in cv. Columbia background. Prevents premature flowering (PubMed:12724541, PubMed:25339407). Involved in the modulation of vernalization impact on flowering according to genotype acclimation to altitude (PubMed:25339407). {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:25339407}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10005413m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed during vernalization (PubMed:12724541). Regulated by HAM1 and HAM2 via epigenetic modification of chromatins at H4K5 acetylation during flowering (PubMed:23273925). {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:23273925}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352777 | 1e-144 | AK352777.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-K22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024007051.1 | 1e-105 | LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL27 | ||||
Swissprot | Q9LSR7 | 2e-78 | AGL70_ARATH; Agamous-like MADS-box protein AGL70 | ||||
TrEMBL | V4KVF7 | 1e-168 | V4KVF7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006394082.1 | 1e-169 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM986 | 19 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65060.1 | 8e-81 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10005413m |
Entrez Gene | 18011922 |
Publications ? help Back to Top | |||
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