PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10005342m | ||||||||
Common Name | EUTSA_v10005342mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 213aa MW: 24293.9 Da PI: 10.9041 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 54.8 | 4.3e-17 | 1 | 95 | 1 | 98 |
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalverdnkllall 85 mdddg+ rn+gyyepa a++k lglqlms+i +r++k+ re nl ++++++++++r+ m++ +++++ ++dnk++++l Thhalv10005342m 1 MDDDGF--RNWGYYEPAaATFKGSLGLQLMSTI-DRNTKPflpgREPNL-MIGSNGSYHPREhessipMNY----SWMNQ------PKDNKFFNML 82 99**99..9*******999**************.9**************.************999999999....*****......********** PP GAGA_bind 86 lvenslasalpvg 98 + + + ++++pv Thhalv10005342m 83 PPNYNNMMHQPVL 95 *998888888764 PP | |||||||
2 | GAGA_bind | 82.8 | 1.2e-25 | 166 | 212 | 255 | 301 |
GAGA_bind 255 iagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 i+grKmSqgafkk+L+kLa+ Gy+++n +DLk+ WA+HGtnkfvtir Thhalv10005342m 166 ISGRKMSQGAFKKVLKKLASKGYSFGNSIDLKSPWARHGTNKFVTIR 212 89********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 5.9E-12 | 1 | 159 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 3.5E-56 | 1 | 212 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 9.0E-23 | 166 | 212 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MDDDGFRNWG YYEPAAATFK GSLGLQLMST IDRNTKPFLP GREPNLMIGS NGSYHPREHE 60 SSIPMNYSWM NQPKDNKFFN MLPPNYNNMM HQPVLNSSRF KENSIPPPPP PLEDKLNKKR 120 KTKSCNTTTT LKAKKLQKPK LESDTTNNVQ HQQQQQRVKP VKKRVISGRK MSQGAFKKVL 180 KKLASKGYSF GNSIDLKSPW ARHGTNKFVT IR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10005342m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ386403 | 1e-145 | FJ386403.1 Thellungiella halophila putative inositol phosphatase gene, partial cds; cyclin-like protein, putative microtubule-associated protein, putative C2H2 zinc finger protein, brassinosteroid receptor-like protein, putative transmembrane transporter, salt overly sensitive 1-like protein, valyl-tRNA synthetase-like protein, putative glutamate decarboxylase, putative peptide transporter, putative F-box protein, putative nitrate transporter, putative NADH dehydrogenase, putative Myb DNA binding proteins, putative C2H2 zinc finger proteins, putative F-box protein, SWI/SNF helicase-like protein, defensin-like proteins, and putative PPR repeat protein genes, complete cds; and unknown genes. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024007639.1 | 1e-102 | LOW QUALITY PROTEIN: protein BASIC PENTACYSTEINE1 | ||||
Swissprot | Q9SKD0 | 9e-70 | BPC1_ARATH; Protein BASIC PENTACYSTEINE1 | ||||
TrEMBL | V4KPA5 | 1e-156 | V4KPA5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006395828.1 | 1e-157 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01930.2 | 3e-56 | basic pentacysteine1 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10005342m |
Entrez Gene | 18012525 |